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OR493421.1__WNY40939.1__X__00055

Bact-Vir

OR493421.1__WNY40939.1__X__00055

Identity

Accession:
OR493421 ↗
Kingdom:
phage

Quality

77.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-159_217-256
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.75 49.0 6.00e-01 91.9% 100.0%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.73 49.0 5.81e-01 95.5% 97.8%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.72 47.0 5.65e-01 92.9% 100.0%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.68 41.0 5.13e-01 96.0% 98.3%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.68 47.0 5.41e-01 93.4% 97.9%
2q83B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 26.0 3.69e-01 76.8% 73.7%
1u5qA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 28.0 3.83e-01 76.8% 80.2%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.61 26.0 3.87e-01 78.8% 88.6%
2lfpA01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.60 40.0 4.67e-01 95.5% 96.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.60 50.0 4.97e-01 96.0% 83.8%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.59 32.0 4.20e-01 89.4% 98.1%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 26.0 3.55e-01 79.3% 83.3%
2vxaA00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.57 19.0 3.04e-01 94.4% 78.8%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 33.0 3.71e-01 97.0% 72.4%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 36.0 4.25e-01 90.9% 92.7%
6ygnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 30.0 3.99e-01 91.9% 99.1%
3pfeA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 29.0 3.54e-01 85.4% 79.2%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 27.0 3.30e-01 84.3% 76.7%
1nvmB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 40.0 4.41e-01 93.4% 100.0%
3cfuA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 29.0 3.35e-01 80.3% 75.0%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.51 36.0 3.78e-01 93.4% 78.6%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.50 40.0 4.01e-01 95.5% 81.8%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3966645 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.76 48.0 5.99e-01 91.4% 100.0%
4261744 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.75 47.0 5.87e-01 92.9% 100.0%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.74 49.0 5.84e-01 93.9% 98.5%
3970985 304.124.1.9 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.73 51.0 5.96e-01 92.9% 100.0%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.70 44.0 5.41e-01 91.4% 100.0%
4888780 304.124.1.5 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.66 61.0 5.81e-01 98.5% 85.5%
4954550 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.64 38.0 4.87e-01 96.0% 100.0%
3921499 304.47.1.0 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.62 36.0 4.32e-01 82.3% 86.2%
3585212 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.59 54.0 5.25e-01 97.0% 93.0%
4952429 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 31.0 4.15e-01 88.9% 97.0%
3894543 304.166.1.6 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › KIAA1549 0.59 33.0 3.98e-01 82.8% 83.2%
3944239 1.1.13.51 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.58 32.0 4.14e-01 88.4% 98.1%
4562028 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.58 38.0 4.32e-01 98.5% 89.0%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.56 37.0 4.07e-01 89.9% 81.4%
3280414 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.56 28.0 3.66e-01 83.3% 85.7%
5019514 881.2.1.0 a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.56 33.0 3.84e-01 90.4% 80.0%
4136515 310.3.1.23 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 0.54 35.0 3.86e-01 98.0% 78.8%
4034209 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.54 36.0 4.24e-01 88.4% 98.5%
184986 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.54 34.0 4.10e-01 88.9% 98.4%
3966825 1.1.13.51 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.54 33.0 4.02e-01 87.9% 97.5%
3980535 1.1.13.51 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.52 33.0 3.88e-01 86.9% 90.4%
3942828 1.1.13.39 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › KPP10_Orf10 0.50 35.0 3.99e-01 94.4% 96.6%
D2 high residues 326-501
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 38.0 4.77e-01 97.7% 87.7%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.67 32.0 4.04e-01 97.2% 75.0%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 32.0 3.85e-01 97.2% 69.7%
1i1rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 31.0 4.08e-01 89.8% 84.0%
8d7eC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 30.0 4.14e-01 94.3% 94.0%
6iaaA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 28.0 3.89e-01 93.2% 88.9%
4l3aA03 2.60.40.3890 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 36.0 4.46e-01 95.5% 92.0%
2luwA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.61 29.0 3.71e-01 97.2% 77.2%
6pgwA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 32.0 4.08e-01 94.9% 89.2%
1bihA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 27.0 3.63e-01 93.8% 81.8%
7cymA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.59 29.0 3.84e-01 92.6% 89.7%
2yr3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 29.0 3.64e-01 92.6% 78.8%
1o59A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 30.0 3.33e-01 98.3% 59.7%
8egxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.58 31.0 3.96e-01 94.9% 90.8%
4wiqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 30.0 3.70e-01 92.6% 80.2%
1ahsA00 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.57 27.0 3.16e-01 96.0% 61.1%
7ok5A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 28.0 3.76e-01 93.8% 90.9%
6bxzA02 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.56 31.0 3.87e-01 94.9% 89.1%
5t4mB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.56 31.0 3.72e-01 95.5% 80.5%
2vmhA00 2.60.120.1060 Mainly Beta › Sandwich › Jelly Rolls › NPCBM/NEW2 domain 0.55 29.0 3.13e-01 96.0% 58.5%
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 31.0 3.78e-01 92.0% 87.2%
2w59B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 30.0 3.67e-01 92.0% 86.0%
3l81A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.52 29.0 3.58e-01 97.7% 85.5%
4bhuA00 2.60.40.3490 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 31.0 3.58e-01 98.3% 80.5%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.51 28.0 3.25e-01 97.7% 73.9%
3jqwC00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.51 29.0 3.47e-01 96.0% 81.0%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5051013 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.70 31.0 4.01e-01 96.6% 70.5%
3258281 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 30.0 3.73e-01 92.6% 64.5%
4955177 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.68 35.0 4.40e-01 98.3% 81.0%
3242982 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 32.0 4.07e-01 95.5% 80.0%
3996132 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.63 29.0 4.02e-01 93.8% 85.6%
1126319 12.1.1.25 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C 0.63 32.0 3.81e-01 96.6% 69.7%
3928568 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.63 29.0 3.64e-01 92.0% 69.1%
3353531 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 35.0 3.93e-01 98.3% 67.9%
3928569 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.63 29.0 3.56e-01 92.0% 66.1%
4816119 12.1.1.25 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C 0.62 30.0 3.72e-01 98.3% 71.8%
3510120 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 32.0 3.42e-01 95.5% 53.8%
3027202 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 30.0 3.73e-01 94.9% 75.0%
3885238 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.61 29.0 3.94e-01 92.6% 87.8%
3488544 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.60 29.0 3.72e-01 94.9% 78.9%
3919780 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 26.0 3.66e-01 91.5% 83.7%
5062507 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.60 30.0 3.70e-01 98.3% 74.5%
3902508 11.1.1.850 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28354 0.60 28.0 3.67e-01 94.3% 81.1%
4337716 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.59 28.0 3.64e-01 95.5% 78.6%
3880210 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.58 26.0 3.60e-01 91.5% 86.3%
3620267 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.58 31.0 3.90e-01 72.2% 88.0%
3797708 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 26.0 3.06e-01 88.6% 56.9%
3859408 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 29.0 2.64e-01 95.5% 34.8%
3476522 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.57 34.0 4.07e-01 94.9% 86.7%
4943895 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 29.0 2.76e-01 71.0% 37.7%
3469966 11.1.1.110 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_2 0.57 32.0 4.00e-01 92.6% 91.4%
3787002 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.56 31.0 3.55e-01 97.7% 72.0%
3885242 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.55 28.0 3.57e-01 92.6% 83.0%
3496117 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.55 32.0 3.80e-01 95.5% 85.2%
3990549 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 28.0 3.60e-01 92.0% 85.0%
3891329 11.1.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.54 28.0 3.06e-01 93.8% 55.3%
3282039 10.2.1.96 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28588 0.53 32.0 3.25e-01 98.3% 60.6%
3466694 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.53 30.0 3.36e-01 100.0% 70.0%
4853024 10.2.1.89 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 0.53 31.0 3.71e-01 97.7% 86.4%
3277040 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 28.0 3.41e-01 71.6% 78.9%
4952417 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 28.0 3.39e-01 97.7% 80.9%
3671864 10.32.1.76 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_gal-bd 0.51 30.0 3.70e-01 89.8% 94.3%
4225090 2002.1.1.160 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Lact_bio_phlase 0.51 45.0 3.34e-01 94.3% 55.6%
3588938 10.2.1.89 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 0.50 32.0 3.27e-01 98.3% 64.7%