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OR493421.1__WNY41141.1__X__00257

Bact-Vir

OR493421.1__WNY41141.1__X__00257

Identity

Accession:
OR493421 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_YC1

TaxID: 3076791

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-99
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gjwA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 38.0 4.52e-01 77.1% 80.9%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.66 47.0 3.20e-01 74.0% 86.8%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.65 48.0 3.92e-01 76.0% 43.9%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.65 48.0 3.90e-01 77.1% 48.6%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.65 50.0 4.66e-01 97.9% 65.8%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.64 48.0 4.48e-01 99.0% 64.2%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 51.0 4.64e-01 88.5% 82.4%
1nkgA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 46.0 3.38e-01 77.1% 74.1%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.62 48.0 3.51e-01 83.3% 62.2%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.61 45.0 3.92e-01 97.9% 50.7%
3eb8B01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.61 36.0 4.36e-01 84.4% 91.8%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 45.0 3.61e-01 77.1% 74.9%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.94e-01 77.1% 85.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.60 45.0 3.67e-01 78.1% 60.1%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 46.0 4.16e-01 80.2% 69.3%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.90e-01 77.1% 82.3%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.60 52.0 4.52e-01 100.0% 63.0%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 45.0 4.11e-01 80.2% 69.3%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 48.0 4.34e-01 87.5% 80.5%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.59 38.0 3.46e-01 78.1% 48.9%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.57 51.0 4.35e-01 99.0% 85.4%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.57 51.0 4.06e-01 100.0% 73.8%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.57 43.0 3.29e-01 80.2% 80.5%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.57 51.0 3.82e-01 100.0% 88.8%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 44.0 4.04e-01 82.3% 70.4%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.57 43.0 3.80e-01 79.2% 65.9%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.67e-01 86.5% 51.6%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 41.0 3.33e-01 80.2% 85.9%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 45.0 3.58e-01 89.6% 50.8%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.55e-01 85.4% 52.6%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 3.32e-01 100.0% 77.1%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.83e-01 75.0% 100.0%
2vg9A00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.54 45.0 3.53e-01 93.8% 97.7%
1qu0C00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 44.0 3.59e-01 89.6% 53.0%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.54 48.0 3.46e-01 94.8% 94.8%
2r1bA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.49e-01 89.6% 51.0%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.54 46.0 3.94e-01 93.8% 90.8%
3pveA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.66e-01 93.8% 50.9%
3e9mB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.52 43.0 3.45e-01 90.6% 73.7%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.52 42.0 3.42e-01 88.5% 94.7%
2jd4A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.64e-01 93.8% 52.8%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.79e-01 87.5% 72.6%
4aieA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.52 32.0 3.60e-01 76.0% 81.9%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 3.35e-01 84.4% 70.5%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 42.0 3.24e-01 92.7% 72.5%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 44.0 3.12e-01 97.9% 94.2%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 42.0 3.92e-01 88.5% 79.0%
1j0hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 35.0 3.70e-01 77.1% 83.1%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.77 56.0 4.26e-01 76.0% 39.0%
4956163 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.77 62.0 4.96e-01 85.4% 45.6%
4128674 4252.1.1.3 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DA_C 0.73 50.0 3.80e-01 70.8% 97.2%
4964031 7089.1.1.7 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF7543 0.71 48.0 5.57e-01 100.0% 95.7%
5014493 331.3.1.12 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › STK_08120-like 0.71 52.0 3.87e-01 100.0% 31.7%
5014023 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.70 55.0 4.41e-01 83.3% 79.3%
1964 12.1.1.9 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF1923 0.69 38.0 4.66e-01 77.1% 82.8%
2103558 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.67 51.0 4.48e-01 79.2% 65.9%
5001279 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.67 59.0 4.01e-01 96.9% 32.3%
3874376 897.1.1.1 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.66 48.0 3.73e-01 76.0% 54.3%
139764 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.66 58.0 4.16e-01 95.8% 64.3%
5791 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.65 50.0 4.66e-01 99.0% 65.5%
3233005 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.65 41.0 3.01e-01 99.0% 24.3%
5792 295.1.1.6 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.64 48.0 4.47e-01 99.0% 63.6%
3638937 220.1.1.195 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_fung_RdRP 0.64 45.0 3.70e-01 72.9% 78.2%
4992060 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.63 47.0 3.89e-01 79.2% 46.3%
3270840 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 35.0 3.63e-01 72.9% 58.9%
4975637 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.61 44.0 4.82e-01 93.8% 91.3%
3233897 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 41.0 3.81e-01 97.9% 55.0%
4991973 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 44.0 3.12e-01 94.8% 26.1%
356532 77.1.1.1 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.59 51.0 3.94e-01 100.0% 41.3%
1063623 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.59 48.0 4.24e-01 87.5% 79.9%
5013018 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 49.0 4.44e-01 91.7% 97.7%
5051538 298.1.1.8 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.59 49.0 3.54e-01 90.6% 87.6%
5011042 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.59 48.0 4.35e-01 100.0% 65.4%
3219284 2484.1.1.190 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.58 40.0 2.91e-01 97.9% 25.3%
3196366 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.58 49.0 3.97e-01 91.7% 81.1%
5082957 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 43.0 3.17e-01 80.2% 57.2%
3894563 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.57 45.0 4.10e-01 83.3% 68.8%
3474457 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 43.0 4.41e-01 100.0% 81.1%
4955776 881.2.1.0 ↗ a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like 0.57 41.0 3.55e-01 75.0% 68.9%
3739528 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.57 42.0 3.23e-01 90.6% 36.1%
3496336 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 3.10e-01 94.8% 90.3%
2717534 12.3.1.31 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YgjK_N 0.57 47.0 3.31e-01 88.5% 65.7%
5022781 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.56 42.0 2.95e-01 81.2% 43.2%
3486389 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 44.0 3.51e-01 85.4% 46.8%
4000086 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 41.0 2.44e-01 81.2% 24.4%
4989818 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.54 43.0 3.28e-01 84.4% 82.7%
3783443 109.2.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_92, Glyco_hydro_92N 0.54 43.0 2.59e-01 85.4% 32.1%
3599544 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 40.0 2.82e-01 79.2% 63.3%
3981185 241.1.1.25 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27378 0.54 46.0 4.35e-01 93.8% 90.4%
3180248 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.53 43.0 4.29e-01 88.5% 97.0%
3903929 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 45.0 3.71e-01 93.8% 64.0%
185604 3400.1.1.1 ↗ a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.53 44.0 3.38e-01 90.6% 57.3%
119405 3089.1.1.1 ↗ a+b two layers › Integron cassette protein VCH_CASS14 › Integron cassette protein VCH_CASS14 › Integron cassette protein VCH_CASS14 › VCH_CASS14 0.52 45.0 4.32e-01 96.9% 93.0%
5044469 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.52 43.0 3.96e-01 91.7% 100.0%
3391302 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 3.00e-01 87.5% 95.0%
4570763 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.52 38.0 2.43e-01 79.2% 41.0%
3215166 3180.1.1.0 ↗ a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.52 40.0 4.08e-01 90.6% 83.2%
1148074 3400.1.1.1 ↗ a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.52 43.0 3.31e-01 90.6% 54.1%
3875861 5.1.4.146 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.61e-01 82.3% 30.8%
1680012 3425.2.1.0 ↗ a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain 0.51 42.0 2.96e-01 93.8% 98.6%
3435896 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.50 43.0 3.11e-01 100.0% 83.2%