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OR493421.1__WNY41150.1__X__00266

Bact-Vir

OR493421.1__WNY41150.1__X__00266

Identity

Accession:
OR493421 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_YC1

TaxID: 3076791

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-83
PDB
Domain cluster: rep: MH248138.1__AWY08536.1__Alexandra_279__00277__D12-80
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 54.0 6.27e-01 94.7% 98.1%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 46.0 5.14e-01 90.7% 79.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 5.69e-01 96.0% 83.3%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.02e-01 94.7% 68.8%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 53.0 5.86e-01 96.0% 98.3%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 49.0 5.39e-01 94.7% 87.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 47.0 4.78e-01 98.7% 69.9%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 52.0 5.14e-01 94.7% 72.8%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.05e-01 93.3% 83.1%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 51.0 5.41e-01 94.7% 96.9%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 5.13e-01 100.0% 87.0%
3o4fC01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.62 39.0 4.52e-01 86.7% 94.1%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.62 42.0 4.03e-01 70.7% 90.7%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 39.0 4.17e-01 86.7% 76.6%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.59 40.0 3.93e-01 70.7% 93.9%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.59 38.0 4.26e-01 88.0% 89.3%
1iy9A02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 37.0 4.30e-01 86.7% 94.2%
2e5wA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.58 37.0 4.08e-01 86.7% 85.7%
7w6zA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 51.0 4.76e-01 98.7% 96.8%
4ntqA00 3.10.380.20 Alpha Beta › Roll › Ribonuclease domain of colicin e3 (Residues 456-551) › Novel toxin 21 (CdiA), C-terminal domain 0.58 32.0 3.28e-01 89.3% 51.3%
3lf7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 43.0 2.77e-01 88.0% 28.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 36.0 4.04e-01 84.0% 89.3%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.55 38.0 4.15e-01 88.0% 89.8%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 45.0 3.30e-01 93.3% 59.6%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 35.0 3.67e-01 92.0% 74.6%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 37.0 3.81e-01 96.0% 77.5%
2i9xA00 3.30.1120.40 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Stage V sporulation protein G 0.53 37.0 3.55e-01 73.3% 96.5%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 45.0 4.42e-01 92.0% 100.0%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.67e-01 98.7% 96.1%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222147 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 55.0 6.09e-01 94.7% 88.3%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 52.0 5.95e-01 94.7% 92.7%
3264879 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 50.0 5.21e-01 96.0% 70.0%
3570700 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.77 50.0 4.27e-01 94.7% 43.5%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 48.0 5.36e-01 96.0% 81.7%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.75 51.0 5.15e-01 94.7% 70.7%
5020252 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 49.0 4.14e-01 98.7% 42.5%
3441143 4.1.1.94 ↗ beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.73 56.0 5.06e-01 96.0% 61.0%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 46.0 4.39e-01 96.0% 56.5%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.73 57.0 5.14e-01 98.7% 62.0%
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.71 55.0 5.32e-01 97.3% 72.9%
3842631 4.1.1.243 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.71 49.0 5.12e-01 96.0% 77.1%
3226615 4.1.1.389 ↗ beta barrels › SH3 › SH3 › SH3 › PF30352 0.71 53.0 4.89e-01 98.7% 62.1%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.66 53.0 5.35e-01 100.0% 85.3%
3555931 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.65 60.0 5.13e-01 100.0% 93.9%
3382832 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.64 56.0 4.16e-01 94.7% 70.0%
3451280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 56.0 4.40e-01 96.0% 57.4%
3362568 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 4.90e-01 92.0% 90.0%
3549474 4.1.1.406 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-A_UBE2O 0.64 57.0 4.36e-01 98.7% 60.7%
3931161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.42e-01 98.7% 56.5%
4002679 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.63 58.0 4.87e-01 98.7% 95.8%
3933135 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 55.0 4.14e-01 96.0% 40.6%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 53.0 5.35e-01 94.7% 90.7%
3495649 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 55.0 5.32e-01 96.0% 96.5%
4003477 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 54.0 4.90e-01 96.0% 87.0%
3594062 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 53.0 4.24e-01 94.7% 75.9%
3610097 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.61 53.0 4.29e-01 94.7% 75.0%
3641051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 56.0 5.18e-01 100.0% 85.3%
3679362 4.1.1.351 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.60 52.0 5.05e-01 96.0% 97.6%
3706730 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 5.08e-01 94.7% 97.5%
3939132 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 53.0 4.79e-01 100.0% 89.0%
3390533 4.8.1.19 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › WAC_Acf1_DNA_bd 0.58 50.0 3.96e-01 97.3% 65.0%
3214694 4.1.1.331 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4708 0.57 49.0 4.37e-01 93.3% 70.5%
5064429 7.1.1.5 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.55 45.0 4.33e-01 90.7% 94.1%
5053225 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.31e-01 96.0% 73.0%
3736784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 49.0 4.18e-01 98.7% 75.0%
3598307 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 46.0 4.30e-01 100.0% 84.2%
3725498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 4.15e-01 94.7% 91.4%
D2 high residues 93-179
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7lb8B02 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.61 53.0 3.68e-01 98.9% 75.8%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.60 41.0 3.57e-01 70.1% 78.2%
2dlaA01 1.20.930.50 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.60 45.0 3.69e-01 79.3% 54.4%
1dc1A02 1.10.238.90 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain 0.58 47.0 4.69e-01 89.7% 88.6%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.55 41.0 3.38e-01 79.3% 70.0%
3qwlA02 1.10.8.680 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ypt/Rab-GAP domain of gyp1p, domain 2 0.55 38.0 4.02e-01 89.7% 83.1%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 43.0 3.72e-01 87.4% 61.7%
8ex5A01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.53 39.0 3.09e-01 78.2% 95.3%
1t9kA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.53 45.0 3.92e-01 95.4% 68.6%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.53 41.0 3.74e-01 85.1% 86.3%
2rekA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 45.0 3.70e-01 97.7% 65.7%
4h79A00 1.10.520.40 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › CRISPR-associated protein Cse2 0.53 45.0 3.62e-01 95.4% 94.4%
1ezfC00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 40.0 2.79e-01 88.5% 81.2%
1wmwB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 43.0 2.98e-01 96.6% 55.8%
7uzqK01 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.50 42.0 2.83e-01 94.3% 73.6%
4fbcA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.50 36.0 2.88e-01 74.7% 96.6%
2yvkA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.50 42.0 3.59e-01 95.4% 66.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3726743 2004.1.1.364 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD+Helicase_C 0.65 52.0 3.15e-01 86.2% 20.2%
3347376 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.61 43.0 2.74e-01 73.6% 31.1%
3242134 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.57 46.0 3.46e-01 90.8% 73.8%
3287854 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.57 40.0 3.17e-01 73.6% 51.1%
3789302 650.1.1.1 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.56 35.0 3.41e-01 71.3% 56.0%
3231065 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.54 45.0 3.33e-01 93.1% 73.5%
3602143 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.54 32.0 2.33e-01 70.1% 21.7%
3793451 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.54 39.0 3.22e-01 79.3% 72.0%
3243832 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.52 45.0 3.20e-01 100.0% 61.0%
3386264 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.51 44.0 2.97e-01 96.6% 27.7%
3284641 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 44.0 3.49e-01 98.9% 67.4%