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OR496884.1__WNV45782.1__X__00006

Bact-Vir

OR496884.1__WNV45782.1__X__00006

Identity

Accession:
OR496884 ↗
Kingdom:
phage

Quality

67.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Chaoshanvirus› Aeromonas_phage_AerS_266

TaxID: 3076793

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-61
PDB
Domain cluster: rep: ON602759.1__UVX31607.1__S13e_00021__00021__D17-71
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tuaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.74 43.0 2.83e-01 93.9% 14.1%
1xw8A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.65 40.0 2.59e-01 95.9% 13.1%
4bqqA01 3.40.50.1390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Resolvase, N-terminal catalytic domain 0.64 40.0 2.91e-01 95.9% 22.1%
3kc2A02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.64 43.0 3.08e-01 71.4% 46.0%
4lv5A01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.62 38.0 2.47e-01 79.6% 13.6%
2xhsA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.62 46.0 2.97e-01 98.0% 16.9%
1i24A02 3.90.25.10 Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 0.61 39.0 2.75e-01 71.4% 22.5%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.61 39.0 3.03e-01 71.4% 30.8%
1z7mF01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 39.0 3.02e-01 75.5% 47.1%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.56 39.0 2.72e-01 75.5% 37.2%
1qhxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 37.0 2.52e-01 75.5% 18.0%
2yyiA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 46.0 3.07e-01 100.0% 61.6%
1r6bX04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.54e-01 73.5% 68.0%
2v3uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 36.0 2.51e-01 71.4% 23.8%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 42.0 2.63e-01 95.9% 82.2%
7z0sF01 3.30.70.3270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 2.91e-01 89.8% 50.9%
1g9rA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 36.0 2.33e-01 77.6% 31.4%
2ydjA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 37.0 2.59e-01 79.6% 27.9%
3qd2B02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 42.0 2.86e-01 93.9% 34.3%
3kepA00 3.30.1610.10 Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Peptidase S59, nucleoporin 0.50 35.0 2.66e-01 77.6% 25.7%
1zxeC02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 38.0 2.68e-01 85.7% 26.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1511065 101.1.2.6 ↗ alpha arrays › HTH › HTH › winged helix domain › GntR 0.75 46.0 3.51e-01 89.8% 27.8%
4076457 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.73 38.0 2.29e-01 79.6% 8.1%
3900309 3226.1.1.2 ↗ alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Sulfate_transp 0.72 39.0 2.23e-01 89.8% 5.9%
3230566 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.69 43.0 2.61e-01 91.8% 9.7%
3587282 142.1.1.10 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.69 40.0 3.53e-01 98.0% 38.6%
3901233 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.68 46.0 2.89e-01 100.0% 12.7%
3219796 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.68 41.0 2.44e-01 85.7% 8.1%
3176201 3567.1.1.159 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF29918 0.67 46.0 3.08e-01 100.0% 17.1%
3934546 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.66 36.0 2.21e-01 87.8% 8.3%
3782850 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.63 43.0 3.14e-01 100.0% 24.1%
4282188 5059.1.1.59 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EmrE 0.63 40.0 2.49e-01 100.0% 10.3%
3202208 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.63 43.0 3.10e-01 100.0% 23.3%
3788734 1117.1.1.1 ↗ alpha arrays › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › EPL1 0.62 44.0 2.86e-01 75.5% 18.6%
3173752 2002.1.1.192 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase 0.62 43.0 2.38e-01 73.5% 7.1%
3230077 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.60 42.0 2.55e-01 100.0% 11.0%
3597508 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.59 37.0 3.24e-01 89.8% 37.5%
3271981 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 40.0 2.83e-01 71.4% 36.1%
3647744 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.57 43.0 3.39e-01 89.8% 100.0%
4374056 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.57 37.0 2.71e-01 71.4% 25.6%
3217313 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.57 50.0 2.98e-01 100.0% 42.6%
3391086 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 48.0 2.80e-01 100.0% 36.2%
3818287 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 2.82e-01 87.8% 24.3%
3176868 129.1.1.102 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › PF30133 0.56 38.0 2.76e-01 73.5% 53.8%
3508781 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 44.0 3.66e-01 89.8% 67.8%
4028853 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 43.0 2.61e-01 85.7% 18.1%
3783976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 43.0 3.55e-01 93.9% 46.7%
5040105 244.3.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › TSCPD 0.55 40.0 3.15e-01 79.6% 56.4%
3690576 5001.1.1.32 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a 0.55 42.0 2.54e-01 89.8% 12.1%
3993228 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 42.0 2.70e-01 87.8% 36.6%
3249549 109.4.1.109 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.54 41.0 2.73e-01 91.8% 57.7%
3578377 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 45.0 3.04e-01 100.0% 30.2%
3740495 633.3.1.1 ↗ alpha bundles › Bromodomain-like › Mob1/phocein › Mob1/phocein › Mob1_phocein 0.53 38.0 2.56e-01 93.9% 19.6%
3244183 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.53 42.0 2.62e-01 93.9% 39.1%
3234719 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.53 44.0 2.71e-01 100.0% 42.7%
3250586 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 43.0 3.13e-01 100.0% 73.3%
3608516 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 38.0 2.84e-01 77.6% 80.8%
3183367 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.52 43.0 2.73e-01 100.0% 81.1%
4960763 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.51 35.0 2.44e-01 75.5% 41.5%
3296288 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 39.0 3.10e-01 85.7% 86.4%
3214589 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.51 40.0 2.48e-01 91.8% 35.2%
3702110 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.51 42.0 2.77e-01 100.0% 37.2%
3928288 1021.1.1.0 ↗ a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.51 37.0 2.90e-01 95.9% 34.2%
3213063 5001.1.1.106 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Str 0.51 43.0 2.64e-01 100.0% 25.5%
3191625 633.3.1.1 ↗ alpha bundles › Bromodomain-like › Mob1/phocein › Mob1/phocein › Mob1_phocein 0.50 38.0 2.44e-01 79.6% 23.9%
3641528 206.1.1.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 41.0 2.42e-01 89.8% 12.6%
D2 medium residues 90-153
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.65 51.0 3.56e-01 96.9% 26.2%
1yguA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 47.0 3.22e-01 92.2% 38.0%
7drdG01 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.58 48.0 3.33e-01 100.0% 47.5%
4l69A02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.56 46.0 3.43e-01 93.8% 40.9%
3pi7A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 44.0 3.51e-01 93.8% 82.3%
3d1pA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.55 46.0 3.84e-01 96.9% 69.2%
2aeuA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 44.0 3.21e-01 98.4% 49.3%
3iupA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 43.0 3.24e-01 96.9% 70.7%
2hy5B00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.53 42.0 3.48e-01 95.3% 84.1%
7k7yG02 1.20.1120.10 Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" 0.52 38.0 2.46e-01 84.4% 55.0%
4ki9A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 43.0 3.36e-01 100.0% 59.9%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2442386 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.76 61.0 6.42e-01 87.5% 100.0%
4021263 7579.1.1.44 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 0.57 47.0 3.18e-01 96.9% 67.0%
3625477 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.56 44.0 3.36e-01 92.2% 38.7%
4654208 2004.1.1.201 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 0.55 46.0 3.25e-01 98.4% 80.0%
3781860 2007.2.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase2 0.54 40.0 3.05e-01 84.4% 80.0%
5024854 2006.1.2.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases 0.54 37.0 3.04e-01 98.4% 35.0%
3689241 2007.15.1.2 ↗ a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase › Nuc_deoxyrib_tr 0.51 43.0 3.03e-01 100.0% 49.4%
4017081 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.51 41.0 2.87e-01 100.0% 58.5%
4403050 109.4.1.81 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF-3c_N 0.51 41.0 2.86e-01 95.3% 58.0%
3466004 109.4.1.450 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF247 0.50 40.0 2.84e-01 92.2% 70.9%
D3 medium residues 383-488
PDB
D4 medium residues 489-619
PDB