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OR513085.1__WNN12424.1__MA9V2_175__00175

Bact-Vir

OR513085.1__WNN12424.1__MA9V2_175__00175

Identity

Accession:
OR513085 ↗
Kingdom:
phage

Quality

84.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chryseobacterium_phage_MA9V-2

TaxID: 3076797

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-79
PDB
Domain cluster: rep: MZ326859.2__QYW02098.1__CPT_Siara_098__00095__DFULL
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ocpB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.80 44.0 3.55e-01 88.9% 30.5%
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.74 52.0 5.10e-01 98.6% 67.5%
4m70B00 1.10.246.200 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain 0.72 51.0 4.66e-01 93.1% 58.2%
5hwoA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.65 57.0 3.50e-01 95.8% 69.6%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 41.0 3.95e-01 94.4% 56.5%
7yulA01 1.10.10.2590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain 0.61 38.0 3.61e-01 90.3% 51.8%
4ix7A00 1.10.10.2590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain 0.61 43.0 3.67e-01 100.0% 45.6%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 54.0 4.68e-01 95.8% 81.1%
2j82A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.60 45.0 3.27e-01 81.9% 34.8%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.60 43.0 4.12e-01 100.0% 64.4%
4yzgA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.59 50.0 3.36e-01 94.4% 92.5%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 37.0 3.60e-01 83.3% 59.0%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.57 48.0 2.88e-01 98.6% 51.9%
5k2xA00 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 48.0 3.00e-01 95.8% 50.7%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 34.0 2.84e-01 87.5% 37.1%
3bg2A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 47.0 3.58e-01 100.0% 42.3%
3k3uA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 44.0 3.57e-01 90.3% 46.7%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.53 39.0 3.90e-01 100.0% 75.0%
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.53 34.0 3.49e-01 86.1% 68.6%
4fybA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 40.0 3.10e-01 83.3% 75.2%
1l8sA00 1.20.90.10 Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain 0.52 44.0 3.78e-01 100.0% 75.0%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 34.0 3.05e-01 83.3% 46.1%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.51 37.0 3.79e-01 84.7% 79.4%
3b8bA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.50 40.0 3.11e-01 86.1% 57.9%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3646235 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.91 56.0 5.20e-01 91.7% 52.9%
3507767 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.90 56.0 5.04e-01 91.7% 48.4%
3742618 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.86 54.0 4.62e-01 91.7% 43.5%
3649730 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.85 60.0 5.47e-01 95.8% 57.8%
3535287 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.84 55.0 5.45e-01 94.4% 64.0%
3568720 101.1.10.17 ↗ alpha arrays › HTH › HTH › Cyclin-like › CycT2-like_C 0.80 55.0 4.74e-01 95.8% 48.6%
3176131 142.1.1.5 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › SRI 0.79 56.0 4.87e-01 100.0% 50.5%
3350187 210.2.1.1 ↗ a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.73 57.0 4.01e-01 100.0% 28.6%
3278820 191.1.1.48 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 0.72 56.0 4.68e-01 98.6% 50.0%
3398929 5041.1.1.32 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › TMEM141 0.70 49.0 4.54e-01 94.4% 57.8%
3261624 3470.1.1.0 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.67 45.0 5.12e-01 91.7% 100.0%
5082662 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.66 48.0 3.46e-01 100.0% 26.7%
4283877 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.66 45.0 3.48e-01 94.4% 31.9%
3457360 103.4.1.6 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › EloA-BP1 0.66 43.0 3.98e-01 100.0% 53.3%
2972075 3759.1.1.1 ↗ alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antiterm 0.64 53.0 5.35e-01 87.5% 90.1%
3310282 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.64 57.0 4.67e-01 93.1% 85.8%
3861597 101.1.10.7 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C 0.64 57.0 4.75e-01 94.4% 83.5%
3927682 524.1.1.0 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p 0.64 47.0 3.79e-01 97.2% 40.7%
4206314 2004.1.1.72 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPT 0.62 54.0 3.68e-01 93.1% 38.7%
4031085 3826.1.1.79 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › DUF1024 0.62 47.0 4.60e-01 81.9% 98.7%
3544646 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.62 40.0 4.04e-01 90.3% 67.1%
4031352 6026.1.1.43 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › DUF1024 0.61 46.0 4.44e-01 83.3% 94.0%
3309541 5063.1.1.17 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Gly-zipper_YMGG 0.59 44.0 4.72e-01 94.4% 98.3%
4603170 2004.1.1.72 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPT 0.58 51.0 3.65e-01 100.0% 96.0%
3743841 10.12.1.101 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 0.58 47.0 3.06e-01 90.3% 48.4%
5005349 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 2.96e-01 100.0% 14.5%
2845631 5019.1.1.1 ↗ extended segments › Subunit III of photosystem I reaction centre, PsaF › Subunit III of photosystem I reaction centre, PsaF › Subunit III of photosystem I reaction centre, PsaF › PSI_PsaF 0.56 41.0 3.36e-01 80.6% 43.7%
4032825 7523.1.1.22 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 0.55 45.0 3.77e-01 94.4% 82.2%
3798232 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 38.0 3.66e-01 75.0% 65.9%
3287048 191.1.1.18 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_14 0.54 47.0 3.79e-01 98.6% 82.1%
4951434 177.1.1.0 ↗ alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease 0.54 44.0 3.24e-01 98.6% 89.6%
3711195 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.51 43.0 3.77e-01 95.8% 68.2%