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OR513085.1__WNN12448.1__MA9V2_199__00199

Bact-Vir

OR513085.1__WNN12448.1__MA9V2_199__00199

Identity

Accession:
OR513085 ↗
Kingdom:
phage

Quality

77.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-63
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.72 58.0 5.47e-01 92.0% 77.0%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 4.23e-01 78.0% 51.4%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 47.0 4.74e-01 86.0% 75.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.34e-01 76.0% 59.7%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 4.13e-01 78.0% 52.1%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 43.0 3.29e-01 78.0% 27.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 44.0 4.29e-01 86.0% 62.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.66 48.0 4.48e-01 78.0% 61.9%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 43.0 3.27e-01 76.0% 27.6%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 48.0 3.68e-01 92.0% 34.5%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 47.0 3.72e-01 88.0% 38.0%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.63 48.0 3.15e-01 84.0% 89.4%
2b1xA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.62 46.0 3.49e-01 86.0% 32.5%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 43.0 3.89e-01 86.0% 52.1%
3kbgA01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.61 39.0 3.41e-01 90.0% 40.7%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.61 48.0 3.56e-01 88.0% 95.0%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.60 41.0 4.39e-01 86.0% 85.4%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 47.0 3.36e-01 92.0% 27.4%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 41.0 3.74e-01 86.0% 52.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 40.0 3.90e-01 72.0% 66.1%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 41.0 3.82e-01 74.0% 92.3%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.59 46.0 3.62e-01 92.0% 61.9%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 41.0 3.85e-01 90.0% 57.6%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.58 39.0 2.43e-01 70.0% 36.1%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 44.0 2.67e-01 92.0% 11.5%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 40.0 3.85e-01 74.0% 84.5%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.57 48.0 3.57e-01 98.0% 92.5%
3qwnA02 2.60.40.2370 Mainly Beta › Sandwich › Immunoglobulin-like › NigD-like, C-terminal beta sandwich domain 0.57 45.0 3.37e-01 90.0% 79.1%
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.57 41.0 3.30e-01 88.0% 37.6%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 3.49e-01 100.0% 33.8%
1mtpA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 43.0 3.59e-01 100.0% 46.2%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 39.0 3.64e-01 86.0% 58.2%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.54 42.0 2.48e-01 88.0% 75.3%
3ne5B01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.54 44.0 3.73e-01 94.0% 75.6%
1dt9A01 3.30.960.10 Alpha Beta › 2-Layer Sandwich › Translation, Eukaryotic Peptide Chain Release Factor Subunit 1; Chain A › eRF1 domain 1 0.53 39.0 3.15e-01 82.0% 100.0%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 41.0 2.52e-01 92.0% 77.3%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 40.0 2.66e-01 88.0% 66.8%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 2.54e-01 70.0% 89.4%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.46e-01 94.0% 51.2%
2l6lA02 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.52 41.0 3.81e-01 90.0% 84.6%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.52 41.0 3.22e-01 98.0% 61.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 45.0 4.12e-01 100.0% 81.8%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.51 39.0 3.19e-01 84.0% 61.9%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 41.0 3.42e-01 100.0% 48.4%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.51 37.0 3.38e-01 100.0% 56.3%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.51 40.0 2.67e-01 100.0% 19.5%
2qa4I01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.51 34.0 3.34e-01 96.0% 63.6%
2qr4A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.51 39.0 3.96e-01 90.0% 100.0%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.51 40.0 3.12e-01 98.0% 58.5%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3939881 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.84 76.0 6.55e-01 100.0% 66.7%
3927677 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.83 64.0 6.70e-01 84.0% 100.0%
3790904 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.79 62.0 5.83e-01 86.0% 73.3%
3368743 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.77 62.0 5.86e-01 90.0% 91.7%
3180626 4.8.1.36 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7141 0.75 61.0 6.10e-01 90.0% 98.0%
5026824 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 50.0 4.51e-01 76.0% 50.0%
3786120 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 61.0 6.15e-01 96.0% 94.0%
3365937 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.72 61.0 5.83e-01 98.0% 96.7%
4241924 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.72 49.0 4.06e-01 78.0% 40.0%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 46.0 4.42e-01 78.0% 56.7%
4888987 4.1.1.6 beta barrels › SH3 › SH3 › SH3 › KOW,40S_S4_C 0.71 48.0 4.35e-01 78.0% 52.2%
3228213 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.70 60.0 5.54e-01 98.0% 80.0%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 57.0 5.52e-01 98.0% 82.8%
5073368 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.42e-01 78.0% 54.3%
3573585 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 58.0 5.71e-01 98.0% 88.9%
3694693 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.68 58.0 5.42e-01 98.0% 75.4%
4074279 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.68 49.0 4.41e-01 78.0% 57.1%
4206684 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.67 48.0 4.43e-01 78.0% 58.5%
4195627 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.67 48.0 4.42e-01 78.0% 58.5%
4014812 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.66 55.0 5.24e-01 96.0% 81.7%
4222760 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.66 46.0 4.16e-01 74.0% 61.4%
4004424 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.65 40.0 2.35e-01 72.0% 7.7%
3687350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.21e-01 76.0% 61.8%
3979396 3454.1.1.4 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › HofP 0.65 49.0 4.30e-01 86.0% 77.5%
4312419 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.64 49.0 3.17e-01 84.0% 90.4%
5077813 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.64 45.0 3.28e-01 86.0% 27.4%
3907406 109.4.1.20 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR 0.64 43.0 2.69e-01 70.0% 20.7%
4443040 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.64 46.0 3.66e-01 86.0% 37.5%
4949063 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.63 44.0 3.40e-01 86.0% 32.5%
3919495 109.4.1.20 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR 0.63 52.0 2.79e-01 98.0% 9.8%
4054678 601.51.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin 0.63 47.0 2.82e-01 84.0% 34.0%
4224041 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.63 45.0 3.99e-01 78.0% 53.3%
4984320 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 44.0 3.26e-01 86.0% 28.5%
3732796 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.63 50.0 2.93e-01 100.0% 10.2%
3969569 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 41.0 3.95e-01 86.0% 60.0%
3966428 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.61 48.0 3.02e-01 92.0% 15.9%
4236900 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 44.0 3.31e-01 86.0% 31.0%
4307191 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.61 44.0 3.85e-01 80.0% 51.2%
3508175 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.60 49.0 4.96e-01 98.0% 94.0%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 41.0 3.74e-01 72.0% 67.1%
3960168 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.59 48.0 4.89e-01 98.0% 100.0%
3546306 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.59 46.0 3.85e-01 90.0% 52.6%
3916950 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.59 48.0 3.15e-01 100.0% 18.6%
3991419 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 48.0 2.83e-01 100.0% 10.5%
4049072 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.58 41.0 3.29e-01 86.0% 35.5%
3943796 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 40.0 3.50e-01 86.0% 46.3%
5047716 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 49.0 3.34e-01 98.0% 26.2%
3288795 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.57 49.0 3.06e-01 98.0% 30.5%
3165957 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.57 44.0 3.98e-01 94.0% 60.0%
4606688 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 40.0 3.63e-01 86.0% 52.0%
4211209 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 39.0 3.66e-01 86.0% 56.9%
3255946 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 45.0 3.86e-01 98.0% 55.0%
3231308 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.55 44.0 3.03e-01 100.0% 49.3%
3767975 220.1.1.38 beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.55 43.0 3.44e-01 90.0% 80.9%
4947615 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.54 41.0 3.89e-01 88.0% 90.8%
3837131 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 44.0 3.53e-01 92.0% 65.7%
3466771 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.54 37.0 3.68e-01 76.0% 81.8%
3536576 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.54 43.0 3.81e-01 100.0% 60.0%
3684518 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.54 42.0 3.38e-01 94.0% 71.3%
3483225 375.3.1.0 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.52 37.0 3.30e-01 82.0% 75.3%
5054141 2.14.1.0 beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like 0.52 41.0 4.10e-01 88.0% 90.0%
5071251 2484.1.1.6 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N 0.52 42.0 3.31e-01 98.0% 67.2%
3325899 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.52 40.0 3.46e-01 96.0% 51.1%
3591459 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 38.0 3.26e-01 86.0% 48.2%
3897327 2.1.1.241 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rsm22 0.51 40.0 3.96e-01 94.0% 85.5%
3914739 223.1.1.78 a+b three layers › Profilin-like › sensor domains › sensor domains › GPR158_179_EC 0.51 42.0 2.92e-01 100.0% 66.8%
3839222 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 39.0 2.89e-01 86.0% 40.7%
138326 101.1.8.2 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I 0.51 40.0 3.01e-01 100.0% 33.8%