←Back to structures

OR513085.1__WNN12492.1__MA9V2_243__00243

Bact-Vir

OR513085.1__WNN12492.1__MA9V2_243__00243

Identity

Accession:
OR513085 ↗
Kingdom:
phage

Quality

37.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chryseobacterium_phage_MA9V-2

TaxID: 3076797

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1949-2018
PDB
D2 medium residues 101-200
PDB
Domain cluster: rep: KP202970.1__AJD82855.1__JWAP_00022__00022__D143-223
D3 medium residues 1523-1576
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yjlA00 2.60.40.2990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.70e-01 96.3% 93.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3241565 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 41.0 3.19e-01 90.7% 27.4%
4317535 2484.1.1.41 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK 0.63 42.0 2.79e-01 70.4% 36.1%
4480622 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.60 40.0 3.10e-01 70.4% 32.6%
11232 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.58 40.0 3.12e-01 72.2% 33.9%
289519 2484.1.1.60 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_E_G 0.56 39.0 4.17e-01 94.4% 100.0%
3469812 206.1.1.10 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.53 37.0 2.31e-01 90.7% 11.3%
3592277 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 41.0 2.87e-01 88.9% 35.7%
3706725 2484.1.1.109 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › bVLRF1 0.51 41.0 2.91e-01 92.6% 37.2%
3209968 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 37.0 2.31e-01 85.2% 51.1%
D4 medium residues 2274-2367
PDB
Domain cluster: rep: LC785692.1__BEU14643.1__X__00064__D439-516
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 47.0 4.53e-01 93.6% 71.7%
2q7sA00 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.54 43.0 3.12e-01 87.2% 53.9%
1wp1B01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.53 45.0 3.01e-01 93.6% 24.7%
2ozbB01 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.51 43.0 3.84e-01 90.4% 80.9%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 40.0 4.12e-01 87.2% 89.0%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4959476 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.65 53.0 3.29e-01 87.2% 61.4%
3994436 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.64 55.0 4.47e-01 91.5% 78.2%
4140340 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 54.0 4.50e-01 91.5% 68.7%
1000517 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 47.0 4.61e-01 93.6% 75.2%
3186897 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.56 50.0 3.19e-01 97.9% 66.7%
3842316 5054.1.1.0 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.56 49.0 3.00e-01 92.6% 31.6%
5059579 2003.4.1.1 ↗ a/b three-layered sandwiches › Rossmann-like › Tryptophan synthase beta subunit-like PLP-dependent enzymes › Tryptophan synthase beta subunit-like PLP-dependent enzymes › PALP 0.55 33.0 2.81e-01 72.3% 33.1%
3700547 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.55 42.0 2.51e-01 79.8% 31.1%
4536899 242.1.1.1 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 0.53 38.0 3.36e-01 74.5% 69.7%
3612403 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.52 43.0 3.70e-01 88.3% 80.7%
3401453 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.52 37.0 4.04e-01 73.4% 88.7%
5023773 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.52 44.0 3.56e-01 91.5% 78.3%
3788056 4336.1.1.0 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like 0.51 42.0 3.77e-01 87.2% 75.2%