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OR515478.1__WNL63028.1__X__00029

Bact-Vir

OR515478.1__WNL63028.1__X__00029

Identity

Accession:
OR515478 ↗
Kingdom:
phage

Quality

91.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Citrobacter_phage_Ci1

TaxID: 3074391

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-83
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.66 51.0 3.82e-01 84.0% 68.1%
3b77A01 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.62 44.0 4.14e-01 75.3% 98.0%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.61 48.0 3.78e-01 86.4% 92.6%
4v1ag00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 43.0 3.62e-01 97.5% 41.9%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 42.0 4.54e-01 80.2% 89.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.58 45.0 3.82e-01 86.4% 65.1%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 45.0 3.51e-01 84.0% 41.5%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.58 49.0 4.02e-01 100.0% 80.0%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 3.92e-01 96.3% 98.1%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.57 44.0 3.97e-01 85.2% 60.9%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.29e-01 95.1% 59.6%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 45.0 3.85e-01 87.7% 75.4%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.55 48.0 4.49e-01 100.0% 87.4%
1ikpA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.60e-01 100.0% 61.9%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 34.0 3.29e-01 79.0% 54.3%
6lkzC01 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.55 49.0 3.17e-01 98.8% 95.1%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.36e-01 93.8% 73.0%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.54 48.0 3.43e-01 100.0% 55.9%
4jglA00 2.40.128.530 Mainly Beta › Beta Barrel › Lipocalin › 0.54 41.0 3.41e-01 82.7% 71.1%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.54 43.0 3.17e-01 88.9% 31.7%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 48.0 3.56e-01 98.8% 78.0%
1snzB00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 39.0 2.64e-01 77.8% 93.3%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 39.0 3.77e-01 79.0% 67.7%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.72e-01 95.1% 90.6%
2v3aA03 3.30.390.120 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 36.0 3.93e-01 70.4% 100.0%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 39.0 3.62e-01 98.8% 63.3%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.35e-01 98.8% 74.6%
2z0fA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.53 40.0 3.78e-01 82.7% 73.5%
2jzjA01 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 36.0 3.35e-01 72.8% 86.5%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.35e-01 77.8% 84.6%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 40.0 3.98e-01 82.7% 78.8%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.51 43.0 3.20e-01 93.8% 82.5%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 38.0 2.40e-01 80.2% 49.6%
3azwA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.12e-01 93.8% 73.9%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.50 39.0 2.68e-01 85.2% 100.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5001279 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.68 61.0 3.99e-01 98.8% 44.3%
3225336 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.66 48.0 3.91e-01 75.3% 58.6%
4929825 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 40.0 3.56e-01 81.5% 42.9%
3971431 241.11.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.64 52.0 5.23e-01 97.5% 90.5%
4928574 241.11.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.63 55.0 5.40e-01 98.8% 94.3%
3276021 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.62 48.0 2.95e-01 84.0% 23.9%
3704328 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 45.0 4.49e-01 75.3% 80.7%
3218903 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 45.0 3.35e-01 79.0% 29.5%
3609492 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.62 51.0 4.24e-01 88.9% 82.9%
3224967 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 46.0 3.25e-01 79.0% 25.9%
3924241 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 46.0 2.69e-01 79.0% 15.2%
3196366 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.62 45.0 3.50e-01 77.8% 54.1%
1141835 220.1.1.17 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_1 0.62 44.0 3.88e-01 75.3% 81.0%
3933051 2003.1.1.51 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.61 53.0 3.74e-01 100.0% 81.0%
5064976 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 47.0 3.71e-01 82.7% 61.3%
3869277 331.18.1.0 ↗ a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc 0.59 44.0 3.40e-01 79.0% 37.8%
3964441 9.11.1.1 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.58 41.0 4.19e-01 75.3% 82.5%
5006258 205.1.1.128 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › APS-reductase_C 0.57 41.0 3.41e-01 75.3% 56.6%
4833287 205.1.1.35 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 0.57 43.0 3.99e-01 79.0% 83.2%
3263625 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.57 43.0 3.54e-01 85.2% 91.5%
3508714 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.56 40.0 3.25e-01 75.3% 77.5%
3261067 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.56 41.0 4.23e-01 87.7% 81.0%
3541447 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 48.0 3.77e-01 97.5% 73.9%
3942738 295.1.1.29 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.55 38.0 3.15e-01 74.1% 78.7%
4322168 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.54 46.0 3.28e-01 93.8% 80.4%
4864839 10.1.1.25 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.54 45.0 3.39e-01 92.6% 96.1%
3239992 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 43.0 3.34e-01 87.7% 99.5%
1570612 10.1.1.25 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.53 46.0 3.49e-01 98.8% 77.3%
2512825 10.1.1.25 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.53 46.0 3.38e-01 98.8% 76.5%
3604108 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.38e-01 81.5% 66.4%
4964119 300.1.1.18 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.51 38.0 3.05e-01 79.0% 77.5%
3279508 283.1.1.4 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › ThrE 0.51 40.0 3.42e-01 86.4% 81.5%
3694123 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 43.0 2.80e-01 97.5% 45.6%
4961646 300.1.1.18 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FilR1_middle 0.50 36.0 2.89e-01 76.5% 87.9%
4486690 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.50 43.0 2.91e-01 97.5% 39.1%