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OR515478.1__WNL63123.1__X__00119

Bact-Vir

OR515478.1__WNL63123.1__X__00119

Identity

Accession:
OR515478 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Citrobacter_phage_Ci1

TaxID: 3074391

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-45
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.68 55.0 3.65e-01 100.0% 26.8%
3k50A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.67 57.0 4.35e-01 95.5% 64.0%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.22e-01 95.5% 88.0%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 5.06e-01 90.9% 89.6%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.86e-01 100.0% 78.3%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.73e-01 95.5% 78.0%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 50.0 3.82e-01 95.5% 46.2%
8axiA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 52.0 3.11e-01 97.7% 31.9%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.38e-01 95.5% 62.0%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.54e-01 97.7% 79.0%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.83e-01 95.5% 86.3%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 49.0 4.72e-01 95.5% 85.2%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.61 47.0 3.32e-01 88.6% 28.6%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.45e-01 100.0% 81.8%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 46.0 2.83e-01 90.9% 95.4%
4m1xD00 3.30.1360.240 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 44.0 3.94e-01 88.6% 87.5%
7uwjC02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.59 40.0 3.17e-01 70.5% 60.8%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 44.0 4.18e-01 95.5% 93.0%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 43.0 2.67e-01 93.2% 49.7%
3lrrA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.56 43.0 3.38e-01 97.7% 72.7%
3tf8B00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.55 42.0 2.87e-01 88.6% 46.2%
4owkE00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 43.0 3.24e-01 100.0% 91.9%
2kv8A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 38.0 3.43e-01 90.9% 83.1%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.53 40.0 3.26e-01 90.9% 48.5%
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.53 38.0 3.13e-01 84.1% 85.7%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.52 36.0 2.55e-01 75.0% 25.0%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 2.66e-01 79.5% 27.7%
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 2.76e-01 97.7% 74.0%
4yfbC01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.50 37.0 2.38e-01 86.4% 38.3%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931904 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.73 56.0 5.28e-01 100.0% 70.9%
3781711 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.73 56.0 5.30e-01 100.0% 70.9%
3703970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 60.0 4.69e-01 100.0% 58.1%
4225207 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.71 54.0 5.02e-01 100.0% 65.0%
3862126 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.71 55.0 5.03e-01 95.5% 65.0%
4997767 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.18e-01 95.5% 86.7%
3701950 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.11e-01 95.5% 71.7%
4014881 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.11e-01 95.5% 86.7%
3486330 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.09e-01 100.0% 80.0%
3933047 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.68 55.0 3.84e-01 95.5% 30.0%
3996279 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.68 58.0 4.82e-01 100.0% 62.5%
3703933 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.67 54.0 4.87e-01 95.5% 80.0%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 55.0 3.52e-01 95.5% 27.6%
3323530 4.1.1.118 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_15 0.66 54.0 4.83e-01 95.5% 83.1%
4372288 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.66 54.0 4.95e-01 95.5% 90.0%
3264808 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.66 54.0 4.71e-01 95.5% 67.1%
3926207 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.34e-01 100.0% 94.3%
3934655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 50.0 4.28e-01 95.5% 96.5%
4024915 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.65 51.0 4.68e-01 95.5% 72.3%
3795384 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 3.39e-01 95.5% 23.7%
3981575 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.04e-01 100.0% 78.2%
3625264 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 4.19e-01 95.5% 49.5%
3704356 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.44e-01 100.0% 56.2%
3693741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 51.0 4.52e-01 95.5% 89.9%
3240407 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.64 50.0 4.49e-01 95.5% 77.1%
4403216 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.64 51.0 4.54e-01 95.5% 64.3%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.46e-01 100.0% 65.0%
3181766 4.1.1.237 ↗ beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 50.0 4.34e-01 95.5% 60.0%
3557677 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 50.0 4.42e-01 95.5% 87.1%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.30e-01 100.0% 60.0%
3749631 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.62 47.0 3.69e-01 86.4% 39.0%
484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.54e-01 97.7% 79.0%
3948255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 3.71e-01 100.0% 36.9%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.62 47.0 4.17e-01 100.0% 70.0%
2167708 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.51e-01 100.0% 76.9%
3306580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.23e-01 86.4% 91.7%
4932493 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.51e-01 100.0% 76.9%
3166679 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 2.86e-01 97.7% 44.3%
3412823 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.57 43.0 4.19e-01 93.2% 80.0%
3591257 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.66e-01 88.6% 98.5%
3649700 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.53 42.0 3.61e-01 100.0% 84.7%