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OR515479.1__WNL63414.1__X__00150

Bact-Vir

OR515479.1__WNL63414.1__X__00150

Identity

Accession:
OR515479 ↗
Kingdom:
phage

Quality

49.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Citrobacter_phage_Tr1

TaxID: 3074392

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 217-270
PDB
Domain cluster: rep: MT682064.1__QMP82025.1__KpV2811_059__00059__D80-130
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.65 56.0 4.62e-01 94.4% 80.6%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.41e-01 88.9% 75.9%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 5.12e-01 83.3% 100.0%
5eqjB01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.63 48.0 4.44e-01 85.2% 87.3%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.77e-01 87.0% 88.7%
1dq3A01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.62 48.0 3.35e-01 85.2% 94.4%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 47.0 4.54e-01 85.2% 98.4%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 52.0 3.83e-01 100.0% 92.9%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.00e-01 79.6% 87.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 53.0 4.54e-01 98.1% 80.2%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.12e-01 92.6% 69.0%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 49.0 4.62e-01 90.7% 86.4%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 48.0 3.96e-01 100.0% 47.1%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.59 44.0 4.13e-01 85.2% 87.5%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 43.0 4.05e-01 85.2% 86.1%
3vkwA01 3.30.450.420 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 51.0 3.68e-01 100.0% 35.3%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 50.0 4.07e-01 100.0% 89.4%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 47.0 3.13e-01 98.1% 22.5%
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.57 48.0 4.05e-01 98.1% 86.5%
4pytA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 48.0 3.76e-01 100.0% 69.5%
2o2zA00 3.40.50.10680 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains 0.57 43.0 2.66e-01 83.3% 40.6%
3kebB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 42.0 3.02e-01 83.3% 57.0%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 4.05e-01 85.2% 78.8%
4ofyD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.88e-01 100.0% 80.6%
1yloE02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.55 46.0 4.12e-01 100.0% 97.6%
1t3qC02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 45.0 3.68e-01 100.0% 85.6%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 39.0 4.06e-01 75.9% 98.0%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.55 48.0 3.93e-01 100.0% 54.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 47.0 4.33e-01 96.3% 87.0%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 46.0 3.92e-01 100.0% 91.7%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 46.0 3.69e-01 100.0% 65.2%
3uc1A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.53 44.0 2.87e-01 100.0% 87.3%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.53 41.0 4.05e-01 90.7% 80.7%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.93e-01 90.7% 77.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.85e-01 85.2% 78.1%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.88e-01 96.3% 82.7%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.51 35.0 3.70e-01 72.2% 91.3%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 40.0 3.92e-01 87.0% 98.3%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.51 40.0 2.60e-01 96.3% 27.6%
1hpgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 44.0 3.65e-01 100.0% 73.7%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 40.0 2.66e-01 92.6% 26.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.50 39.0 3.06e-01 87.0% 57.5%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.50 41.0 3.28e-01 100.0% 49.6%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3904649 12.5.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › GPS 0.75 42.0 2.90e-01 77.8% 16.7%
5048974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.23e-01 90.7% 62.7%
4321108 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.63 54.0 5.42e-01 100.0% 96.4%
3625817 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.63 55.0 4.86e-01 100.0% 83.7%
3907190 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.63 51.0 4.20e-01 88.9% 66.3%
4646501 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 3.57e-01 88.9% 34.2%
3698553 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.62 46.0 4.59e-01 77.8% 94.5%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 53.0 4.91e-01 98.1% 94.3%
139162 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.61 47.0 4.56e-01 85.2% 100.0%
4120000 304.24.1.1 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.61 47.0 3.67e-01 87.0% 94.4%
3704305 4.1.1.344 ↗ beta barrels › SH3 › SH3 › SH3 › PF31193 0.61 52.0 4.76e-01 94.4% 94.3%
3635320 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.61 41.0 4.41e-01 79.6% 84.4%
3392470 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.59 39.0 4.25e-01 79.6% 84.4%
4937158 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 52.0 5.05e-01 100.0% 95.0%
4306152 148.1.3.203 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.58 42.0 3.01e-01 77.8% 63.2%
1030895 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.58 43.0 4.12e-01 85.2% 91.2%
4258822 12.3.1.61 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › PF25837 0.57 45.0 3.05e-01 94.4% 21.8%
3973332 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 49.0 4.46e-01 100.0% 86.7%
3282775 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.57 43.0 4.09e-01 85.2% 95.4%
5034059 284.1.1.0 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.57 43.0 4.09e-01 85.2% 93.8%
4412641 148.1.3.203 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 0.56 39.0 2.81e-01 74.1% 64.5%
3223001 10.4.1.9 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 0.56 48.0 3.82e-01 100.0% 55.7%
4609257 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.56 47.0 2.91e-01 96.3% 30.2%
3196947 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 47.0 2.68e-01 100.0% 13.0%
4102294 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.55 45.0 2.88e-01 96.3% 29.8%
3970673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 4.33e-01 96.3% 81.5%
3415385 11.2.1.31 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4788 0.55 39.0 3.01e-01 77.8% 97.8%
3290050 217.1.1.1 ↗ a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 0.54 43.0 3.18e-01 100.0% 60.5%
2179 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.54 46.0 2.85e-01 96.3% 29.4%
3779679 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.54 45.0 2.87e-01 100.0% 17.5%
3978661 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 45.0 3.81e-01 92.6% 58.9%
3549615 10.32.1.221 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25900 0.54 44.0 3.25e-01 100.0% 88.8%
3560187 5.1.4.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.53 38.0 2.31e-01 75.9% 92.6%
3494269 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 44.0 2.78e-01 100.0% 15.9%
4161673 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.53 42.0 3.68e-01 88.9% 68.2%
3532264 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.53 43.0 3.29e-01 100.0% 35.5%
3203053 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.53 44.0 3.21e-01 100.0% 48.2%
4028934 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.53 42.0 2.78e-01 98.1% 27.1%
4935505 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.52 44.0 2.81e-01 100.0% 83.9%
5040531 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 42.0 3.43e-01 100.0% 94.4%
4493828 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.52 41.0 2.75e-01 98.1% 30.3%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.52 40.0 3.95e-01 87.0% 96.6%
3260848 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 3.13e-01 100.0% 62.9%
5051263 2003.1.5.66 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.51 40.0 2.80e-01 96.3% 80.8%
3209401 11.1.1.837 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TAF2_3rd 0.51 42.0 3.25e-01 96.3% 80.7%
5056535 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.84e-01 100.0% 81.2%
5082233 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.51 43.0 3.82e-01 100.0% 75.3%
3633220 4.1.2.2 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.51 42.0 3.88e-01 100.0% 74.7%
4038119 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 41.0 3.16e-01 100.0% 75.3%
5058691 11.1.1.284 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PKD_4 0.50 37.0 3.40e-01 88.9% 57.3%
D2 high residues 313-406
PDB
Domain cluster: rep: OR525700.1__WQN06902.1__X__00212__D223-314
D3 medium residues 113-210
PDB