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OR515479.1__WNL63476.1__X__00198

Bact-Vir

OR515479.1__WNL63476.1__X__00198

Identity

Accession:
OR515479 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Citrobacter_phage_Tr1

TaxID: 3074392

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 280-336
PDB
Domain cluster: rep: NC_079179.1__YP_010844740.1__QNH00_gp79__00079__D392-447
D2 medium residues 1-73
PDB
Domain cluster: rep: MK813941.1__QEG08797.1__X__00082__D17-71
D3 medium residues 115-207
PDB
Domain cluster: rep: OP120783.1__WDS30446.1__CSG01_022__00022__D417-501
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i8tA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 47.0 4.07e-01 73.1% 50.7%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 47.0 4.22e-01 79.6% 98.5%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 49.0 4.19e-01 82.8% 60.3%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.62 53.0 4.69e-01 94.6% 83.3%
6u5vB07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 46.0 4.14e-01 79.6% 96.9%
4q1vA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.60 48.0 3.10e-01 87.1% 66.5%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 42.0 3.38e-01 74.2% 48.9%
1jovA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 45.0 3.22e-01 83.9% 99.3%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 43.0 4.15e-01 83.9% 89.9%
1pguA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 3.21e-01 91.4% 76.9%
2wsuA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 4.26e-01 97.8% 80.6%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 43.0 3.00e-01 88.2% 81.2%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 38.0 3.38e-01 74.2% 53.2%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.78e-01 91.4% 63.7%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 3.10e-01 90.3% 82.1%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 40.0 2.79e-01 83.9% 37.5%
2qe8A00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 41.0 2.86e-01 86.0% 70.3%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 42.0 2.95e-01 91.4% 54.5%
1pguA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.97e-01 87.1% 70.5%
4ir8A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 43.0 3.54e-01 92.5% 69.7%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.52 42.0 3.04e-01 91.4% 78.5%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 2.82e-01 87.1% 65.7%
2f2hA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 3.52e-01 75.3% 89.9%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 41.0 2.83e-01 90.3% 51.8%
1cruA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 41.0 2.70e-01 89.2% 60.3%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.84e-01 90.3% 71.9%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4007747 3735.1.1.14 ↗ beta meanders › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › Rearrangement hotspot (RHS) repeats protein › TEN_YD-shell 0.62 53.0 3.00e-01 94.6% 11.1%
4000395 2007.1.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like 0.58 42.0 3.23e-01 75.3% 41.9%
3231054 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.57 46.0 4.03e-01 87.1% 78.6%
2012 12.3.1.3 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.57 45.0 3.22e-01 83.9% 99.3%
3740435 5.1.4.35 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.57 45.0 3.18e-01 90.3% 55.0%
3703666 10.1.1.56 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › TS_C 0.56 45.0 3.79e-01 90.3% 91.2%
4114694 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 38.0 3.37e-01 84.9% 47.1%
3935989 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 43.0 2.95e-01 86.0% 52.6%
3192492 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.55 44.0 3.08e-01 89.2% 75.9%
3781393 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.55 39.0 4.06e-01 74.2% 88.1%
3931445 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 45.0 3.53e-01 90.3% 70.4%
4651619 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 45.0 3.60e-01 90.3% 76.3%
3446029 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.55 45.0 3.84e-01 91.4% 54.2%
None — 0.54 45.0 3.20e-01 92.5% 60.0%
3501831 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 43.0 3.44e-01 88.2% 70.2%
1649977 101.15.1.2 ↗ alpha arrays › HTH › LysM domain › LysM domain › OapA 0.54 37.0 3.80e-01 71.0% 100.0%
195810 5.1.3.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › MRJP 0.54 41.0 2.85e-01 82.8% 69.4%
3199490 5.1.4.369 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.54 43.0 2.59e-01 92.5% 28.3%
3536554 77.1.1.2 ↗ beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › FAM194 0.54 42.0 4.18e-01 84.9% 90.5%
3788193 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 40.0 3.37e-01 78.5% 82.6%
3517387 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 3.11e-01 89.2% 66.0%
3659657 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 43.0 2.66e-01 92.5% 30.7%
3655876 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.53 43.0 2.64e-01 93.5% 44.9%
3703463 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 44.0 2.54e-01 97.8% 21.4%
3999383 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 42.0 2.97e-01 90.3% 47.9%
3415741 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 35.0 3.07e-01 72.0% 44.1%
3765767 5.1.5.110 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_FAM234A_B 0.52 42.0 2.75e-01 91.4% 40.6%
3369627 5.1.4.226 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF7899 0.52 43.0 2.79e-01 90.3% 70.0%
3404508 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 3.04e-01 93.5% 86.3%
3826506 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 39.0 2.86e-01 81.7% 72.3%
3473080 5.1.4.329 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30693 0.52 42.0 2.79e-01 91.4% 48.4%
4366777 5.1.5.205 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF27482 0.52 43.0 3.02e-01 97.8% 60.5%
1512998 3953.1.1.1 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N 0.51 35.0 3.69e-01 71.0% 98.8%
3718163 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.51 44.0 3.81e-01 97.8% 89.3%
3535431 5.1.3.9 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.51 41.0 3.00e-01 90.3% 69.3%
4223255 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.51 42.0 2.96e-01 94.6% 63.6%
3365640 5.1.4.36 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.51 42.0 2.76e-01 91.4% 71.8%
4027343 77.2.1.1 ↗ beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.51 43.0 3.77e-01 98.9% 78.7%
3479552 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 3.39e-01 94.6% 71.0%
3328948 246.2.1.3 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos,Metallophos_C 0.50 44.0 3.06e-01 100.0% 81.4%
1318584 5.1.4.418 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lactonase 0.50 40.0 2.84e-01 91.4% 55.4%
3706628 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 40.0 2.73e-01 90.3% 53.2%
D4 medium residues 217-272
PDB
Domain cluster: representative