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OR521062.1__WNO26269.1__SEA_GOATIFICATION_47__00047

Bact-Vir

OR521062.1__WNO26269.1__SEA_GOATIFICATION_47__00047

Identity

Accession:
OR521062 ↗
Kingdom:
phage

Quality

85.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-91
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.77 54.0 4.39e-01 100.0% 40.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 42.0 3.44e-01 78.5% 36.6%
3cymA03 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.67 55.0 4.98e-01 98.5% 65.9%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 53.0 5.21e-01 100.0% 83.3%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.66 54.0 5.57e-01 95.4% 96.8%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 5.17e-01 96.9% 98.1%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.64 32.0 3.66e-01 98.5% 63.8%
3fxhA00 1.20.120.600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Crystal structure from the mobile metagenome of halifax harbour sewage outfall 0.64 54.0 4.61e-01 96.9% 90.3%
2ph5A02 3.30.360.30 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like 0.64 53.0 3.46e-01 93.8% 83.4%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.63 44.0 3.34e-01 84.6% 31.8%
1z21A00 1.10.10.1000 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain 0.62 54.0 4.80e-01 98.5% 74.0%
5ayvA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 53.0 4.29e-01 95.4% 54.4%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.62 47.0 3.70e-01 81.5% 62.6%
2vy1A00 1.10.4180.10 Mainly Alpha › Orthogonal Bundle › Protein LEAFY › Protein LEAFY 0.62 53.0 4.05e-01 100.0% 76.1%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 47.0 4.87e-01 90.8% 98.3%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 54.0 4.08e-01 96.9% 49.3%
3mdmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 53.0 3.25e-01 100.0% 71.0%
2hgkA01 1.20.1440.40 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like 0.60 44.0 3.77e-01 78.5% 100.0%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.60 45.0 3.66e-01 81.5% 66.4%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.59 48.0 4.44e-01 90.8% 77.9%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 49.0 4.27e-01 96.9% 60.8%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.58 42.0 4.39e-01 81.5% 85.0%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.57 44.0 4.03e-01 92.3% 62.9%
1ybzA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.57 47.0 4.52e-01 100.0% 77.6%
2hivA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.57 40.0 2.84e-01 73.8% 84.4%
1xx7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 47.0 3.58e-01 96.9% 41.3%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.56 42.0 3.15e-01 83.1% 90.4%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.56 45.0 4.21e-01 98.5% 70.4%
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.56 47.0 3.65e-01 93.8% 61.0%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 46.0 3.84e-01 87.7% 57.1%
1t3qA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.56 46.0 4.34e-01 95.4% 76.5%
1wteB01 1.10.3250.10 Mainly Alpha › Orthogonal Bundle › type ii restriction endonuclease, domain 1 › type ii restriction endonuclease, domain 1 0.56 48.0 3.75e-01 98.5% 69.4%
3vayA02 1.20.120.1600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 42.0 3.85e-01 81.5% 98.9%
2etsA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.54 48.0 3.98e-01 100.0% 87.8%
1l3eB00 1.20.1020.10 Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain 0.53 45.0 3.88e-01 93.8% 84.2%
1ed1A00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.53 38.0 3.22e-01 76.9% 78.9%
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 41.0 3.05e-01 87.7% 33.0%
2or0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 46.0 3.25e-01 95.4% 76.9%
2fbnA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 46.0 3.47e-01 98.5% 42.5%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 43.0 4.17e-01 98.5% 82.7%
3c2gA02 1.10.10.1630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like 0.51 37.0 3.75e-01 96.9% 77.9%
7jgdA01 1.20.1310.20 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Duffy-antigen binding domain 0.51 43.0 3.44e-01 95.4% 55.6%
3zdrA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.51 42.0 2.94e-01 90.8% 75.7%
2vklA00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.50 45.0 4.27e-01 98.5% 84.4%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4440435 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.73 59.0 4.28e-01 86.2% 55.9%
4028137 101.1.1.418 alpha arrays › HTH › HTH › Three-helical HTH › FF_PRPF40A 0.71 54.0 5.78e-01 87.7% 100.0%
3858480 101.1.17.18 alpha arrays › HTH › HTH › FF domain › FF_PRPF40A 0.70 56.0 5.50e-01 95.4% 82.9%
3812232 101.21.1.1 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.70 54.0 4.32e-01 98.5% 41.5%
4135840 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.69 61.0 3.81e-01 100.0% 49.4%
4292774 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.69 61.0 4.15e-01 100.0% 70.0%
3938334 101.1.17.18 alpha arrays › HTH › HTH › FF domain › FF_PRPF40A 0.69 55.0 5.43e-01 92.3% 82.9%
3246361 101.1.17.18 alpha arrays › HTH › HTH › FF domain › FF_PRPF40A 0.69 55.0 5.51e-01 92.3% 87.7%
3341560 101.1.17.18 alpha arrays › HTH › HTH › FF domain › FF_PRPF40A 0.69 56.0 5.49e-01 95.4% 84.3%
4992091 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.68 58.0 3.47e-01 96.9% 13.0%
3934732 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 54.0 5.42e-01 92.3% 86.2%
4289957 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 60.0 3.28e-01 100.0% 16.8%
5056343 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.38e-01 89.2% 45.6%
4374802 639.2.1.2 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › DUF2767 0.67 58.0 5.82e-01 96.9% 100.0%
4238922 589.1.2.1 alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.67 48.0 3.54e-01 83.1% 30.3%
4956043 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.66 52.0 4.40e-01 98.5% 49.2%
3217497 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.66 51.0 4.94e-01 86.2% 81.3%
3870735 601.25.1.5 alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › OPA1_C 0.65 51.0 4.24e-01 93.8% 46.4%
3785071 109.4.1.17 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cullin 0.64 52.0 4.50e-01 100.0% 57.0%
4104623 1079.1.1.8 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.64 55.0 3.95e-01 98.5% 83.0%
4995018 212.1.1.0 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.64 53.0 4.03e-01 98.5% 37.5%
4989195 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 51.0 4.26e-01 89.2% 54.8%
4980637 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.62 51.0 4.47e-01 95.4% 60.0%
4021213 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.86e-01 86.2% 93.8%
5026063 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.61 52.0 3.97e-01 98.5% 51.5%
3167709 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.61 52.0 4.38e-01 96.9% 57.4%
3596922 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.61 51.0 3.80e-01 89.2% 39.9%
3479895 4015.1.1.0 alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins 0.60 46.0 3.25e-01 84.6% 47.3%
3955952 106.1.1.11 alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.60 48.0 3.77e-01 95.4% 87.5%
3936163 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.59 48.0 4.87e-01 93.8% 89.2%
4963200 601.7.1.34 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.59 45.0 3.98e-01 84.6% 58.0%
3258496 108.1.1.26 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.59 45.0 4.26e-01 76.9% 78.7%
3798489 164.1.1.0 alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II 0.59 50.0 4.29e-01 100.0% 69.1%
5054075 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.58 40.0 4.23e-01 72.3% 100.0%
3990494 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.58 49.0 4.54e-01 100.0% 75.3%
3922168 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.58 47.0 4.65e-01 93.8% 92.9%
3626320 3919.1.1.2 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN 0.57 49.0 4.23e-01 100.0% 84.5%
3798329 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.57 49.0 4.21e-01 100.0% 84.5%
4013760 4015.1.1.1 alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.57 44.0 3.05e-01 89.2% 28.1%
3930420 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.56 47.0 4.65e-01 90.8% 92.9%
5015625 2004.1.1.120 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII 0.56 43.0 2.61e-01 86.2% 48.6%
3577300 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.56 45.0 4.35e-01 93.8% 98.7%
4000709 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.56 48.0 4.75e-01 95.4% 88.6%
3309133 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.55 38.0 3.54e-01 89.2% 55.3%
3643902 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 50.0 3.96e-01 100.0% 79.2%
3622037 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.55 48.0 4.05e-01 100.0% 82.6%
3927846 109.4.1.1948 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle 0.54 49.0 3.27e-01 100.0% 73.2%
3250201 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.54 46.0 4.67e-01 100.0% 100.0%
3674695 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 41.0 3.59e-01 86.2% 54.1%
3180777 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.54 42.0 4.22e-01 95.4% 88.6%
3648217 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.54 41.0 3.57e-01 86.2% 53.0%
3503474 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.53 45.0 3.12e-01 96.9% 78.2%
5059134 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.52 41.0 4.25e-01 84.6% 90.0%
5069090 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 44.0 4.56e-01 95.4% 98.3%
5069212 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.52 43.0 4.36e-01 93.8% 90.6%
5034435 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 45.0 4.21e-01 96.9% 85.0%
4982048 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.50 41.0 3.85e-01 92.3% 71.2%
4290271 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.50 42.0 3.78e-01 90.8% 66.7%