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OR521068.1__WNO26741.1__SEA_GROUNDHOG_54__00053

Bact-Vir

OR521068.1__WNO26741.1__SEA_GROUNDHOG_54__00053

Identity

Accession:
OR521068 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Fromanvirus› Mycobacterium_phage_Groundhog

TaxID: 3077816

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-65
PDB
Domain cluster: rep: MT757392.1__QNI20522.1__KB2_gp044__00040__D84-137
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11753.14 best DUF3310 44.0 2.70e-11 89.5% 93.3%
D2 high residues 79-133
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.68 53.0 3.16e-01 83.6% 91.5%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.68 56.0 5.21e-01 96.4% 78.1%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.68 59.0 4.12e-01 100.0% 66.3%
7fjlA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.67 51.0 3.92e-01 85.5% 76.6%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.67 55.0 4.95e-01 96.4% 100.0%
4by6C00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.66 50.0 3.51e-01 81.8% 26.1%
3dsoA00 2.40.10.300 Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K 0.65 47.0 4.48e-01 81.8% 65.2%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 52.0 3.39e-01 100.0% 31.0%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 48.0 3.05e-01 83.6% 80.1%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 47.0 2.99e-01 83.6% 74.3%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 44.0 2.81e-01 74.5% 21.7%
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.62 42.0 3.74e-01 70.9% 56.2%
3gt2A00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 53.0 4.04e-01 100.0% 40.7%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.60 46.0 3.79e-01 87.3% 85.7%
1yw4B00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 47.0 3.05e-01 92.7% 23.3%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.73e-01 89.1% 100.0%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 47.0 3.79e-01 89.1% 83.6%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.42e-01 87.3% 91.7%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 48.0 3.98e-01 100.0% 49.6%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 48.0 3.08e-01 92.7% 86.1%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 48.0 3.81e-01 100.0% 47.3%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 3.91e-01 78.2% 87.1%
3eebA00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.57 42.0 2.94e-01 83.6% 57.6%
2dfuA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.56 41.0 4.40e-01 81.8% 100.0%
2edgA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 43.0 3.40e-01 89.1% 89.2%
3rfoA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.54 44.0 3.68e-01 96.4% 94.3%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 36.0 2.80e-01 78.2% 29.1%
4a4yA01 2.60.200.50 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.54 43.0 3.67e-01 94.5% 86.7%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 43.0 3.82e-01 100.0% 74.4%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 42.0 3.71e-01 98.2% 72.0%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.33e-01 89.1% 82.7%
1nijA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.55e-01 76.4% 21.9%
2vdwG00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 41.0 2.70e-01 90.9% 38.4%
4f78A01 3.30.200.180 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.51 36.0 3.04e-01 78.2% 60.6%
4g7nA02 3.30.1120.130 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 40.0 3.45e-01 94.5% 63.9%
6qkgA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 39.0 3.17e-01 87.3% 98.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4253206 4.1.1.127 ↗ beta barrels › SH3 › SH3 › SH3 › DtxR 0.70 60.0 5.19e-01 100.0% 90.0%
3958137 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 58.0 5.04e-01 100.0% 90.0%
2646224 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.69 48.0 2.99e-01 74.5% 20.6%
2626002 5.1.4.45 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.68 48.0 2.91e-01 74.5% 18.3%
3423460 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.68 50.0 2.92e-01 78.2% 21.5%
4861382 5.1.4.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.68 48.0 3.44e-01 74.5% 41.2%
None — 0.68 52.0 3.11e-01 83.6% 86.8%
2646216 6.1.1.39 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › PQQ_2 0.68 48.0 3.68e-01 74.5% 53.2%
147742 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.67 51.0 3.13e-01 81.8% 71.6%
3290377 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.67 52.0 3.29e-01 83.6% 90.4%
3804431 5.1.3.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N 0.67 51.0 3.12e-01 83.6% 44.4%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.17e-01 90.9% 90.0%
4980648 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.88e-01 90.9% 81.4%
2646217 5.1.2.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › PQQ_2 0.66 46.0 4.45e-01 74.5% 78.1%
5036616 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 53.0 4.99e-01 92.7% 82.9%
4943121 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.65 46.0 2.75e-01 74.5% 15.1%
3231684 4.1.2.3 ↗ beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › TRA-1_regulated 0.64 50.0 4.06e-01 87.3% 89.0%
4967397 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 49.0 4.77e-01 90.9% 87.7%
3242312 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 48.0 3.06e-01 83.6% 79.7%
3245194 5.1.3.152 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SSL_N 0.63 48.0 2.89e-01 83.6% 42.0%
1527848 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.63 47.0 2.91e-01 83.6% 63.8%
3450584 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.62 46.0 2.93e-01 83.6% 84.4%
4981036 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 42.0 4.51e-01 74.5% 100.0%
3282690 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.61 47.0 3.86e-01 100.0% 42.5%
3418340 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.61 46.0 2.83e-01 81.8% 67.6%
3517016 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 46.0 2.87e-01 83.6% 71.5%
3236041 4.1.1.342 ↗ beta barrels › SH3 › SH3 › SH3 › TRA-1_regulated 0.60 49.0 3.88e-01 94.5% 98.4%
4472406 5.1.5.80 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_IFT122_1st 0.60 45.0 2.90e-01 83.6% 86.9%
3776456 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.60 45.0 3.89e-01 80.0% 71.4%
3382832 4.1.1.302 ↗ beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.60 45.0 3.27e-01 94.5% 26.7%
3656988 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 50.0 3.01e-01 94.5% 94.4%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.59 46.0 4.56e-01 89.1% 88.3%
4025576 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 45.0 2.95e-01 83.6% 67.3%
3998283 3534.1.1.3 ↗ beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF4505 0.58 39.0 3.48e-01 70.9% 83.5%
3291045 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 47.0 3.98e-01 100.0% 51.4%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.58 45.0 4.55e-01 92.7% 98.2%
3739678 5.1.4.74 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Vps16_N 0.58 47.0 2.85e-01 92.7% 70.7%
4954979 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 40.0 3.74e-01 76.4% 90.7%
2491389 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.56 42.0 3.06e-01 87.3% 53.0%
4943966 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 38.0 3.11e-01 83.6% 75.8%
3608706 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 43.0 2.72e-01 100.0% 82.6%