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OR521080.1__WNO27792.1__SEA_HUWBERT_40__00040

Bact-Vir

OR521080.1__WNO27792.1__SEA_HUWBERT_40__00040

Identity

Accession:
OR521080 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Huwbert

TaxID: 3077825

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 83-136
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.86 65.0 6.49e-01 79.6% 80.0%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.74 56.0 5.28e-01 85.2% 68.2%
2lkiA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.68 50.0 4.35e-01 79.6% 100.0%
3s0aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.66 52.0 4.03e-01 87.0% 56.3%
1pxyB03 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.64 43.0 3.46e-01 72.2% 44.9%
6e94A02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.62 35.0 3.49e-01 98.1% 50.0%
3bkhA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.61 43.0 3.77e-01 75.9% 54.7%
1h6uA01 1.10.8.390 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Internalin N-terminal Cap domain-like 0.61 34.0 3.73e-01 70.4% 67.4%
5h0pA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 42.0 3.55e-01 79.6% 94.1%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 35.0 3.33e-01 75.9% 47.1%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 47.0 3.45e-01 92.6% 90.0%
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.56 44.0 3.97e-01 96.3% 80.0%
3q8gA01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.56 46.0 4.09e-01 92.6% 64.6%
2e4tA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 39.0 2.38e-01 77.8% 15.7%
5e37A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 39.0 3.45e-01 77.8% 76.7%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.54 37.0 3.65e-01 70.4% 89.3%
4xjxA04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 37.0 2.50e-01 79.6% 39.6%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.52 37.0 3.50e-01 85.2% 64.5%
4fwdA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 43.0 3.88e-01 98.1% 79.5%
2m0rA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 36.0 3.08e-01 79.6% 74.0%
1x6vB03 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 40.0 2.65e-01 87.0% 38.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3253972 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.90 64.0 7.28e-01 74.1% 100.0%
3528983 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.90 61.0 6.92e-01 70.4% 95.0%
3715853 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.89 67.0 7.10e-01 79.6% 91.7%
3712494 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.89 68.0 6.83e-01 81.5% 83.6%
3612921 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.89 66.0 6.64e-01 81.5% 78.2%
3472431 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.88 61.0 6.89e-01 74.1% 97.5%
5053068 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.87 59.0 6.79e-01 72.2% 95.0%
3476467 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 63.0 6.51e-01 77.8% 82.0%
4260463 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.87 64.0 6.97e-01 77.8% 95.6%
3716587 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 65.0 6.50e-01 79.6% 78.2%
3261240 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.86 61.0 6.88e-01 74.1% 100.0%
1066185 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.86 62.0 6.25e-01 79.6% 75.9%
3251015 130.1.2.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.86 64.0 4.38e-01 79.6% 25.5%
3611122 130.1.1.32 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.86 66.0 6.55e-01 81.5% 80.0%
3737764 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.86 62.0 5.48e-01 77.8% 54.7%
3520581 130.1.1.8 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › ARMET_C 0.85 62.0 6.74e-01 77.8% 93.3%
3880607 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.85 63.0 6.32e-01 79.6% 78.2%
3252664 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.85 63.0 6.32e-01 79.6% 78.2%
3249598 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 64.0 5.79e-01 79.6% 68.6%
4428371 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.85 62.0 6.74e-01 77.8% 95.6%
3267637 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 61.0 6.31e-01 79.6% 82.0%
3254598 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 61.0 5.53e-01 77.8% 58.6%
3698371 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.84 60.0 6.21e-01 75.9% 80.0%
3253259 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 59.0 6.71e-01 74.1% 100.0%
3943133 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 63.0 6.85e-01 81.5% 95.6%
3571045 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.84 58.0 6.37e-01 77.8% 90.7%
3191312 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.84 61.0 6.60e-01 79.6% 93.3%
3880529 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 62.0 5.77e-01 77.8% 64.6%
3222410 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 58.0 6.36e-01 77.8% 90.7%
3568558 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 62.0 6.03e-01 79.6% 71.7%
3172891 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.83 61.0 6.37e-01 79.6% 84.0%
3598653 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 61.0 6.53e-01 81.5% 93.3%
3252602 2004.1.1.24 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C 0.82 61.0 3.37e-01 81.5% 6.5%
3881311 130.1.1.32 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.82 59.0 6.34e-01 77.8% 91.1%
3635200 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.81 57.0 5.73e-01 79.6% 72.7%
4136263 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.81 59.0 6.42e-01 79.6% 93.3%
4623858 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.81 60.0 6.46e-01 81.5% 95.6%
3815708 130.1.1.40 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF7722 0.80 59.0 6.30e-01 77.8% 93.3%
3191284 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.80 57.0 5.89e-01 75.9% 86.0%
3272915 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.79 60.0 5.98e-01 81.5% 90.9%
3881355 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.79 57.0 5.96e-01 77.8% 84.0%
3480954 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.78 57.0 6.15e-01 77.8% 100.0%
3198528 130.1.1.16 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.78 59.0 5.93e-01 81.5% 85.5%
4567937 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.78 56.0 5.85e-01 77.8% 84.0%
3533552 130.1.1.35 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ashwin (DEPRECATED) 0.78 57.0 6.14e-01 77.8% 97.8%
3259450 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.77 54.0 5.75e-01 77.8% 88.9%
3375928 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.76 57.0 3.72e-01 81.5% 19.6%
3407017 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.76 54.0 5.79e-01 75.9% 95.6%
3512653 130.1.1.2 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.75 56.0 5.66e-01 81.5% 85.5%
4545934 130.1.1.29 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SLS1_N 0.75 58.0 5.28e-01 83.3% 65.7%
3650342 130.1.1.10 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.75 52.0 5.38e-01 74.1% 80.0%
3714674 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.73 55.0 5.47e-01 81.5% 80.0%
4149132 247.1.1.5 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B,HAGH_C 0.65 50.0 3.27e-01 87.0% 42.0%
3631772 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.60 45.0 3.25e-01 87.0% 70.0%
3296177 103.5.1.4 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › HCS_D2 0.55 39.0 3.49e-01 74.1% 65.0%