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OR521080.1__WNO27840.1__SEA_HUWBERT_91__00089

Bact-Vir

OR521080.1__WNO27840.1__SEA_HUWBERT_91__00089

Identity

Accession:
OR521080 ↗
Kingdom:
phage

Quality

66.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Huwbert

TaxID: 3077825

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 129-186
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 66.0 5.13e-01 100.0% 47.6%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 66.0 6.15e-01 100.0% 83.6%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 65.0 6.23e-01 100.0% 88.1%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 64.0 4.93e-01 100.0% 46.2%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 63.0 5.61e-01 100.0% 69.4%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.72 63.0 5.10e-01 100.0% 53.1%
3ucsA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.71 62.0 5.23e-01 100.0% 63.6%
3qaoA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 61.0 4.61e-01 100.0% 42.9%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.69 61.0 5.69e-01 100.0% 84.7%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.68 61.0 4.78e-01 100.0% 48.8%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.65 43.0 4.63e-01 91.4% 81.6%
1q9jB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.63 47.0 3.29e-01 81.0% 84.4%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.61 41.0 3.45e-01 98.3% 39.4%
5t3eB02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.61 47.0 3.04e-01 82.8% 80.2%
3hjeA03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.58 45.0 3.82e-01 96.6% 51.6%
2jgpA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.58 49.0 3.34e-01 100.0% 79.0%
1bvp103 1.10.170.10 Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 3 › Bluetongue Virus 10, subunit 1, domain 3 0.58 47.0 4.19e-01 100.0% 70.8%
1l5aA03 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.56 48.0 3.35e-01 100.0% 84.6%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.56 47.0 4.09e-01 100.0% 72.6%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.55 41.0 3.10e-01 82.8% 97.4%
1vpwA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 38.0 3.88e-01 79.3% 75.4%
6n8eA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.54 44.0 2.98e-01 100.0% 77.7%
2bskB00 1.10.287.810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains 0.53 36.0 3.51e-01 74.1% 63.1%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.53 43.0 3.15e-01 96.6% 90.8%
1nu7D01 1.20.120.750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle domain 1 0.53 43.0 3.46e-01 100.0% 83.0%
2vsqA02 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.52 43.0 2.99e-01 100.0% 74.1%
7jtjA01 3.30.559.30 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain 0.52 43.0 2.95e-01 100.0% 83.4%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 44.0 3.46e-01 100.0% 46.2%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.52 44.0 2.80e-01 100.0% 94.6%
3n2xA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 43.0 2.80e-01 98.3% 81.9%
2cw7A02 1.10.10.1010 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV 0.51 41.0 3.13e-01 94.8% 35.6%
2jarA02 1.10.40.40 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Deoxyribonucleotidase; domain 2 0.51 36.0 3.68e-01 77.6% 94.5%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4117084 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 65.0 5.39e-01 91.4% 57.0%
4668445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 63.0 6.50e-01 93.1% 96.4%
1827815 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 66.0 6.26e-01 100.0% 86.8%
4564454 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.74 65.0 5.35e-01 100.0% 57.1%
3587879 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.73 65.0 5.28e-01 100.0% 54.5%
None — 0.73 65.0 6.13e-01 100.0% 85.7%
4420911 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 65.0 4.96e-01 100.0% 43.7%
4197446 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 65.0 4.94e-01 100.0% 45.2%
4672676 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 65.0 4.88e-01 100.0% 43.6%
4520820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.73 64.0 5.89e-01 98.3% 77.3%
3291061 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 64.0 5.11e-01 100.0% 53.0%
4034325 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 65.0 5.03e-01 100.0% 48.0%
4470278 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 63.0 5.06e-01 98.3% 51.3%
4527553 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 60.0 6.12e-01 93.1% 96.4%
4536234 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 64.0 5.11e-01 100.0% 52.2%
3282573 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 64.0 5.00e-01 100.0% 48.8%
3943313 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 64.0 5.12e-01 100.0% 52.2%
4980892 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 63.0 5.01e-01 100.0% 50.0%
3284505 101.1.9.36 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR 0.72 63.0 5.08e-01 100.0% 52.2%
5041445 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 64.0 5.50e-01 100.0% 71.1%
2527708 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 63.0 4.70e-01 98.3% 41.3%
3281873 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.72 64.0 4.23e-01 100.0% 26.1%
3941467 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 63.0 5.71e-01 100.0% 75.0%
3291393 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.72 62.0 5.03e-01 100.0% 53.0%
3589820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 62.0 4.86e-01 98.3% 47.2%
3281073 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 63.0 5.18e-01 100.0% 58.1%
3976015 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 63.0 5.69e-01 100.0% 73.8%
3980766 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 63.0 5.06e-01 98.3% 53.6%
3285380 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 64.0 4.94e-01 100.0% 48.0%
3586960 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 62.0 5.31e-01 100.0% 64.2%
3284686 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.71 63.0 4.19e-01 100.0% 26.5%
1844183 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 62.0 4.78e-01 100.0% 45.5%
4266122 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 63.0 5.37e-01 100.0% 61.1%
2775358 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 62.0 5.01e-01 98.3% 54.5%
4031764 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 61.0 4.67e-01 98.3% 42.8%
4488952 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.71 62.0 5.01e-01 98.3% 53.6%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.71 63.0 5.65e-01 100.0% 73.8%
4597624 3601.1.1.1 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.71 63.0 4.55e-01 100.0% 38.1%
3282255 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 63.0 5.10e-01 100.0% 55.6%
4284807 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 60.0 4.56e-01 98.3% 42.1%
3291218 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.70 62.0 4.74e-01 100.0% 46.2%
3281871 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.69 61.0 4.84e-01 100.0% 50.0%
3948487 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.69 61.0 4.68e-01 100.0% 44.4%
4504812 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.69 60.0 5.37e-01 100.0% 70.6%
3284690 3601.1.1.0 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.69 61.0 4.52e-01 100.0% 38.7%
3411600 143.2.1.1 ↗ alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.69 58.0 4.53e-01 96.6% 43.1%
171609 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.69 61.0 4.66e-01 100.0% 45.9%
3512080 1113.1.1.1 ↗ alpha arrays › Protein of Unknown Function YPO2564 › Protein of Unknown Function YPO2564 › Protein of Unknown Function YPO2564 › DUF1198 0.69 60.0 5.11e-01 98.3% 60.0%
4061721 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.69 61.0 4.69e-01 100.0% 46.2%
4158719 143.2.1.1 ↗ alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.68 57.0 4.53e-01 96.6% 44.8%
3946914 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 59.0 4.61e-01 100.0% 46.2%
3945289 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 60.0 4.68e-01 100.0% 48.0%
3288603 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.68 58.0 5.40e-01 98.3% 80.0%
3278826 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.68 59.0 4.67e-01 98.3% 48.3%
4390858 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.67 52.0 5.50e-01 91.4% 98.0%
4196673 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.67 55.0 5.66e-01 91.4% 96.4%
4090636 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 57.0 5.45e-01 100.0% 82.9%
4051681 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.66 57.0 4.43e-01 100.0% 43.0%
3849756 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.65 52.0 4.82e-01 93.1% 69.3%
4406283 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.61 51.0 4.87e-01 98.3% 88.6%
3587522 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.61 53.0 5.03e-01 100.0% 84.3%
3693701 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 47.0 2.79e-01 86.2% 11.4%
4030988 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.60 51.0 4.77e-01 100.0% 88.0%
3590852 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.60 51.0 4.41e-01 98.3% 60.0%
4400363 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.60 50.0 4.79e-01 100.0% 88.6%
4207520 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.59 50.0 4.65e-01 100.0% 88.0%
3736853 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.56 47.0 3.28e-01 96.6% 61.0%
4007855 101.15.1.12 ↗ alpha arrays › HTH › LysM domain › LysM domain › PF30403 0.53 44.0 4.02e-01 100.0% 80.0%
3262326 3615.1.1.24 ↗ alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CDK5RAP3 0.52 43.0 3.22e-01 98.3% 53.1%
3970671 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 33.0 3.14e-01 89.7% 53.3%