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OR521081.1WNO27914.1SEA_HALO3_46__00046

Bact-Vir

OR521081.1__WNO27914.1__SEA_HALO3_46__00046

Identity

Accession:: OR521081 ↗
Kingdom:: phage

Quality

89.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stackebrandtviridae› Wizardvirus› Gordonia_phage_Halo3

TaxID: 3077826

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-107

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07508.20 best	Recombinase	39.9	5.90e-10	95.7%	97.1%

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4bqqB02	3.90.1750.20	Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2	0.85	79.0	6.06e-01	98.9%	65.8%
6dnwA01	3.90.1750.20	Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2	0.84	74.0	6.59e-01	100.0%	69.9%
1w36C06	1.10.10.990	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.69	44.0	4.85e-01	91.3%	81.9%
1ug3A02	1.25.40.180	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.58	42.0	3.75e-01	100.0%	53.9%
3x1oA00	1.20.120.1790	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.54	40.0	3.52e-01	80.4%	79.2%
5zyrA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.54	35.0	3.06e-01	98.9%	40.4%
5je8B02	1.10.1040.10	Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2	0.54	44.0	3.99e-01	90.2%	88.3%
3ue3A03	3.40.710.10	Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily	0.52	44.0	3.55e-01	94.6%	92.9%
3draB00	1.50.10.20	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.50	44.0	3.01e-01	100.0%	78.8%

ECOD (26)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4939690	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.93	76.0	7.36e-01	98.9%	78.0%
4969809	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.92	87.0	8.09e-01	100.0%	84.5%
5032641	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.91	85.0	7.95e-01	98.9%	82.7%
3956288	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.91	86.0	7.38e-01	100.0%	74.8%
4932316	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.88	73.0	7.06e-01	98.9%	79.0%
5030856	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.87	78.0	6.95e-01	94.6%	69.6%
4072866	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.87	81.0	6.75e-01	97.8%	81.4%
4998605	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.87	67.0	6.28e-01	89.1%	67.3%
3987818	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.87	77.0	7.07e-01	94.6%	80.9%
5038787	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.86	76.0	7.07e-01	97.8%	78.2%
3962001	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.86	80.0	6.82e-01	100.0%	70.0%
1062575	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.85	79.0	6.05e-01	98.9%	65.4%
1145762	101.1.1.40 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Recombinase	0.83	75.0	6.57e-01	100.0%	68.5%
3282607	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.60	40.0	3.63e-01	100.0%	50.4%
4961793	101.1.2.929 ↗	alpha arrays › HTH › HTH › winged helix domain › HVO_2833_C	0.56	40.0	2.81e-01	88.0%	23.0%
3735908	109.4.1.1588 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27584, PF27595, PF30849	0.55	48.0	2.65e-01	98.9%	17.0%
3899864	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	41.0	3.93e-01	98.9%	70.5%
4982553	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.54	38.0	3.73e-01	95.7%	66.7%
3169484	109.4.1.1289 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30856	0.54	47.0	2.78e-01	100.0%	19.4%
5050809	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	45.0	3.07e-01	96.7%	29.1%
5045218	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	37.0	3.61e-01	72.8%	86.7%
4296494	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.52	41.0	2.90e-01	85.9%	54.1%
3789439	603.1.1.222 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Rbsn	0.51	43.0	3.50e-01	95.7%	52.8%
4057167	3016.1.1.2 ↗	a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3	0.51	26.0	2.88e-01	84.8%	58.9%
5040538	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	39.0	4.10e-01	93.5%	95.2%
5051540	622.4.1.0 ↗	alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related	0.50	35.0	2.97e-01	73.9%	81.2%

D2 high residues 122-297

PDB

Domain cluster: rep: NC_051618.1__YP_009953031.1__I5G97_gp067__00042__D290-463

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ek9A00	1.20.1600.10	Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP)	0.57	40.0	3.04e-01	70.5%	99.8%
4zudA01	1.20.1070.10	Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins	0.55	39.0	3.43e-01	71.6%	65.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3221686	5001.1.1.41 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw	0.54	39.0	4.14e-01	73.3%	96.1%