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OR521082.1__WNO28070.1__SEA_MARSHMALLOW_109__00107

Bact-Vir

OR521082.1__WNO28070.1__SEA_MARSHMALLOW_109__00107

Identity

Accession:
OR521082 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kostyavirus› Mycobacterium_phage_Marshmallow

TaxID: 3069510

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-105
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF07463.17 best NUMOD4 45.5 9.60e-12 53.5% 93.9%
PF13392.13 HNH_3 25.4 1.20e-05 39.4% 82.6%
D2 medium residues 125-165
PDB
Domain cluster: rep: IMGVR_UViG_3300025326_000612-3300025326-Ga0209342_100263602__D92-144
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5axgA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.69 57.0 3.30e-01 92.7% 20.9%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.67 47.0 2.90e-01 75.6% 13.4%
3p5pA02 1.50.10.160 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 43.0 2.72e-01 70.7% 28.2%
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.63 48.0 4.06e-01 95.1% 46.5%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.61 50.0 4.98e-01 95.1% 90.7%
5feyA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 46.0 3.92e-01 90.2% 48.7%
1z6uA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 44.0 3.37e-01 87.8% 32.2%
2csyA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 42.0 3.88e-01 87.8% 55.0%
3vk6A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.60 46.0 4.23e-01 90.2% 62.7%
3ho6B00 3.40.50.11050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MARTX cysteine protease (CPD) domain 0.59 42.0 2.57e-01 75.6% 20.9%
2wnhA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.59 50.0 2.93e-01 100.0% 16.8%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 44.0 3.81e-01 90.2% 50.0%
3wirA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 47.0 2.67e-01 90.2% 23.8%
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 39.0 3.61e-01 87.8% 50.7%
4la9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 40.0 3.00e-01 85.4% 26.9%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 49.0 2.97e-01 100.0% 83.9%
2lxhC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 42.0 3.82e-01 87.8% 58.6%
3vvfA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 50.0 3.38e-01 100.0% 83.9%
1epwA01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.54 44.0 2.50e-01 92.7% 34.5%
2lgvA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 39.0 3.18e-01 87.8% 51.0%
2o1mA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 37.0 3.00e-01 85.4% 31.5%
3i6vA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 44.0 3.04e-01 90.2% 85.1%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.15e-01 95.1% 56.0%
3gueA02 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.53 38.0 2.85e-01 78.0% 28.4%
3kbrA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 46.0 3.16e-01 97.6% 91.4%
2q88A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 44.0 3.07e-01 92.7% 88.7%
2cszA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 37.0 3.29e-01 85.4% 46.1%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 47.0 2.86e-01 100.0% 31.7%
3p3vA00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.52 38.0 2.69e-01 90.2% 78.9%
5dkaA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 37.0 3.08e-01 90.2% 38.5%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.27e-01 90.2% 86.8%
5d0iB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 37.0 3.61e-01 87.8% 68.6%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.50 34.0 2.63e-01 70.7% 22.0%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.50 45.0 2.56e-01 100.0% 11.1%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024032 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 54.0 4.49e-01 100.0% 49.4%
4207810 3225.1.1.2 ↗ alpha complex topology › Serrate RNA effector molecule › Serrate RNA effector molecule › Serrate RNA effector molecule › SERRATE_Ars2_N 0.66 45.0 2.69e-01 100.0% 11.0%
3457383 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 51.0 4.25e-01 97.6% 45.6%
3705847 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.66 54.0 4.66e-01 100.0% 57.1%
3935843 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.66 54.0 4.57e-01 97.6% 54.7%
3825947 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.66 51.0 4.73e-01 100.0% 66.7%
3354588 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.65 51.0 4.72e-01 100.0% 66.7%
3573660 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 50.0 4.21e-01 97.6% 49.4%
3255227 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 51.0 4.14e-01 97.6% 43.2%
3392056 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.65 52.0 4.32e-01 97.6% 85.9%
3683169 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.65 52.0 4.15e-01 97.6% 41.0%
3494950 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 53.0 4.44e-01 100.0% 53.8%
4030787 605.1.1.303 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Terminase_4 0.63 45.0 3.37e-01 97.6% 31.0%
4011843 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.63 50.0 4.12e-01 97.6% 66.7%
3250498 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.63 50.0 3.99e-01 100.0% 42.0%
3342185 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.62 47.0 3.91e-01 97.6% 43.2%
3457996 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 51.0 3.86e-01 97.6% 35.7%
3395505 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.62 46.0 4.56e-01 87.8% 80.0%
3192866 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.62 45.0 3.99e-01 87.8% 51.4%
3431026 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.62 49.0 4.01e-01 97.6% 43.2%
4958938 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.62 42.0 4.16e-01 70.7% 64.4%
3818195 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.61 45.0 3.86e-01 87.8% 46.7%
3666975 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 50.0 4.15e-01 97.6% 48.2%
3242317 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 48.0 4.01e-01 97.6% 47.1%
3430765 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 49.0 3.94e-01 97.6% 41.0%
4011583 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 48.0 3.92e-01 100.0% 78.9%
3797192 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 44.0 4.18e-01 87.8% 67.3%
3929205 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.60 44.0 3.74e-01 90.2% 45.0%
3749618 376.1.1.29 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 0.59 46.0 3.69e-01 97.6% 38.0%
3311001 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 42.0 3.38e-01 80.5% 34.0%
4018018 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 47.0 3.74e-01 97.6% 52.4%
3339917 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.59 46.0 3.93e-01 100.0% 50.0%
3400662 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.59 49.0 3.71e-01 97.6% 38.2%
3221979 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 48.0 3.98e-01 100.0% 46.7%
3351326 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 43.0 4.46e-01 85.4% 97.1%
3489435 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 44.0 3.90e-01 87.8% 51.4%
3692487 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 44.0 3.58e-01 97.6% 41.0%
3589629 307.1.1.3 ↗ a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY 0.58 44.0 2.93e-01 90.2% 83.9%
3770354 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.58 46.0 3.87e-01 100.0% 49.4%
3240279 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.57 46.0 3.87e-01 100.0% 47.1%
3928956 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 40.0 3.75e-01 80.5% 58.2%
3607247 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 40.0 4.12e-01 78.0% 94.3%
3598301 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 43.0 3.64e-01 100.0% 46.7%
4933456 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.56 44.0 3.44e-01 87.8% 42.5%
3671742 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.56 45.0 4.23e-01 97.6% 72.7%
3899147 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.56 41.0 3.64e-01 90.2% 51.4%
3723227 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.56 43.0 3.73e-01 100.0% 91.3%
3468754 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.56 38.0 3.44e-01 80.5% 50.0%
3881612 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.55 43.0 4.00e-01 100.0% 66.7%
1520106 7523.1.1.4 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.55 39.0 3.29e-01 85.4% 40.0%
3636589 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 42.0 3.56e-01 100.0% 81.1%
3407405 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.55 38.0 3.46e-01 80.5% 47.1%
5366 304.48.1.15 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 0.55 49.0 2.80e-01 100.0% 35.4%
3433472 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 39.0 3.99e-01 87.8% 97.1%
3576409 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 37.0 3.58e-01 80.5% 61.8%
3891696 377.1.1.20 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.54 40.0 4.10e-01 85.4% 85.0%
3442184 376.1.5.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › AN1-like Zinc finger 0.54 36.0 3.29e-01 70.7% 47.5%
3336588 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.54 37.0 2.28e-01 73.2% 11.5%
3894865 375.8.1.3 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › GATA 0.54 37.0 4.06e-01 80.5% 100.0%
3564138 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.53 40.0 3.92e-01 82.9% 75.6%
3454848 376.1.1.70 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Sina_RING 0.53 38.0 3.87e-01 87.8% 97.1%
3395502 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.53 36.0 3.61e-01 87.8% 70.0%
4984852 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.53 43.0 2.66e-01 92.7% 23.3%
3249194 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 37.0 2.46e-01 80.5% 51.7%
3903161 377.1.1.20 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Vps39_2 0.52 36.0 3.66e-01 82.9% 85.0%
1520893 7523.1.1.4 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_3 0.52 36.0 2.98e-01 87.8% 35.0%
3240391 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.52 36.0 3.78e-01 80.5% 94.3%
3563021 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.51 38.0 3.46e-01 100.0% 57.1%
3380329 376.1.1.120 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-Vps39_C 0.51 36.0 3.33e-01 80.5% 55.0%
3482536 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.50 36.0 3.72e-01 90.2% 100.0%
3933676 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.50 36.0 3.40e-01 92.7% 61.7%