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OR521083.1__WNO28150.1__SEA_DIMINIMUS_47__00047

Bact-Vir

OR521083.1__WNO28150.1__SEA_DIMINIMUS_47__00047

Identity

Accession:
OR521083 ↗
Kingdom:
phage

Quality

91.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vilmaviridae› Bongovirus› Mycobacterium_phage_Diminimus

TaxID: 3035375

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-107
PDB
Domain cluster: rep: OP172814.1__WAX16789.1__PD482P1_00022__00022__D2-101
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 34.0 4.03e-01 91.3% 79.5%
2afsA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 48.0 3.48e-01 88.3% 84.2%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.59 46.0 3.44e-01 85.4% 91.0%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.57 41.0 3.46e-01 75.7% 92.7%
3g7pA00 1.10.3100.20 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Protein of unknown function DUF269 0.56 46.0 4.12e-01 88.3% 71.7%
4dkkA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 36.0 4.10e-01 87.4% 91.9%
2n3gA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 37.0 4.25e-01 83.5% 97.2%
4mo0A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.54 30.0 3.36e-01 72.8% 68.4%
3eeeA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.54 38.0 3.20e-01 86.4% 40.4%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 39.0 3.09e-01 77.7% 79.2%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.52 38.0 3.91e-01 91.3% 77.5%
3a7rA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 41.0 3.16e-01 86.4% 87.5%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.52 31.0 3.36e-01 76.7% 69.8%
2hzpA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 41.0 3.50e-01 85.4% 96.0%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 23.0 3.13e-01 79.6% 90.5%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 30.0 2.92e-01 98.1% 49.2%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 37.0 3.72e-01 78.6% 93.6%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.57e-01 80.6% 90.8%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4478971 4.1.1.174 ↗ beta barrels › SH3 › SH3 › SH3 › DUF951 0.67 35.0 4.35e-01 95.1% 81.5%
3266046 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.64 32.0 4.07e-01 87.4% 81.7%
4949036 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.64 32.0 4.34e-01 87.4% 98.0%
3726634 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 36.0 4.03e-01 73.8% 75.0%
4931302 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.61 29.0 3.86e-01 84.5% 90.0%
3420092 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 38.0 4.22e-01 79.6% 83.7%
4948613 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.58 46.0 3.58e-01 86.4% 89.5%
3179206 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 35.0 3.98e-01 86.4% 81.0%
5068574 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.57 46.0 3.33e-01 88.3% 86.0%
4204243 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.57 37.0 2.44e-01 75.7% 15.1%
2723677 2011.1.1.8 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 0.57 44.0 3.37e-01 86.4% 94.8%
5076836 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 40.0 2.60e-01 75.7% 89.8%
3825518 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 34.0 3.85e-01 86.4% 89.3%
137125 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.53 37.0 3.18e-01 84.5% 42.5%
4950106 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.52 40.0 3.37e-01 81.6% 64.1%
5062579 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 4.09e-01 87.4% 100.0%
3615641 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 37.0 3.94e-01 78.6% 90.6%
4934117 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 33.0 3.63e-01 81.6% 81.2%