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OR521085.1__WNO28333.1__SEA_PSONYX_23__00023
Bact-VirOR521085.1__WNO28333.1__SEA_PSONYX_23__00023
Identity
- Accession:
- OR521085 ↗
- Kingdom:
- phage
Quality
61.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-109
Domain cluster:
rep: OR521085.1__WNO28334.1__SEA_PSONYX_24__00024__D30-132
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fsdA00 | 2.60.40.2460 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain | 0.73 | 64.0 | 6.39e-01 | 94.4% | 98.2% |
| 2f0cA02 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.72 | 63.0 | 6.40e-01 | 96.3% | 97.1% |
| 2vtwA00 | 2.60.90.30 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Fiber protein 1, C-terminal domain | 0.69 | 61.0 | 4.90e-01 | 95.4% | 93.7% |
| 2wcoA03 | 2.60.220.10 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal | 0.68 | 57.0 | 5.65e-01 | 100.0% | 85.2% |
| 2z1kA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 47.0 | 5.14e-01 | 94.4% | 94.1% |
| 3zghA00 | 2.60.40.3400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 51.0 | 4.37e-01 | 96.3% | 78.5% |
| 3ecqA02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.59 | 52.0 | 3.95e-01 | 100.0% | 91.4% |
| 1rwhA02 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.58 | 52.0 | 3.89e-01 | 100.0% | 56.8% |
| 1g6eA00 | 2.60.20.30 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.57 | 43.0 | 4.66e-01 | 94.4% | 100.0% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 49.0 | 3.68e-01 | 100.0% | 89.1% |
| 2zxqA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 49.0 | 3.70e-01 | 100.0% | 95.8% |
| 3l4yA05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 50.0 | 4.60e-01 | 100.0% | 99.3% |
| 4p78C00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.55 | 27.0 | 3.28e-01 | 88.9% | 72.7% |
| 1xruA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 47.0 | 4.18e-01 | 100.0% | 66.9% |
| 4uapA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 47.0 | 4.27e-01 | 98.1% | 79.3% |
| 1ywkC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 43.0 | 3.36e-01 | 100.0% | 37.9% |
| 6b9tF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 46.0 | 4.63e-01 | 96.3% | 97.2% |
| 4k35A02 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.53 | 46.0 | 3.83e-01 | 100.0% | 79.4% |
| 4iefA00 | 2.60.40.3800 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 39.0 | 3.29e-01 | 80.6% | 85.4% |
| 1jgtB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 47.0 | 3.82e-01 | 100.0% | 66.8% |
| 2vgaA00 | 2.60.240.10 | Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein | 0.51 | 43.0 | 3.61e-01 | 95.4% | 83.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588403 | 5092.1.1.0 ↗ | beta sandwiches › Domain in virus attachment proteins › Domain in virus attachment proteins › Domain in virus attachment proteins | 0.78 | 69.0 | 7.10e-01 | 94.4% | 99.0% |
| 5063755 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.64 | 44.0 | 3.75e-01 | 87.0% | 43.4% |
| 4335239 | 10.12.1.22 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI | 0.55 | 47.0 | 3.50e-01 | 95.4% | 46.3% |
| 4270486 | 10.12.1.22 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI | 0.54 | 46.0 | 3.54e-01 | 100.0% | 38.5% |
| 4009823 | 5084.5.1.19 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › AsmA | 0.54 | 44.0 | 3.15e-01 | 88.9% | 35.2% |
| 4003952 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.53 | 43.0 | 3.75e-01 | 92.6% | 79.4% |
| 5047859 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.52 | 33.0 | 3.95e-01 | 75.0% | 98.6% |
| 3578114 | 10.12.1.21 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R | 0.52 | 44.0 | 3.70e-01 | 95.4% | 53.3% |
| 3225849 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.51 | 43.0 | 3.44e-01 | 94.4% | 59.6% |
| 3937762 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.51 | 41.0 | 3.40e-01 | 89.8% | 82.9% |
| 4013354 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.50 | 43.0 | 3.08e-01 | 92.6% | 59.0% |