Back to structures

OR521085.1__WNO28396.1__SEA_PSONYX_89__00089

Bact-Vir

OR521085.1__WNO28396.1__SEA_PSONYX_89__00089

Identity

Accession:
OR521085 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-76
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.80 50.0 5.76e-01 71.8% 85.2%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.68 55.0 5.05e-01 88.7% 97.9%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 46.0 3.47e-01 91.5% 54.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924159 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 48.0 4.37e-01 71.8% 53.3%
3255227 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 57.0 5.12e-01 85.9% 92.6%
3702126 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.70 52.0 4.92e-01 78.9% 98.8%
3401103 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 49.0 4.29e-01 73.2% 52.0%
3438467 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.69 55.0 5.03e-01 84.5% 100.0%
3430765 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.69 56.0 4.91e-01 85.9% 89.0%
3720327 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 51.0 4.56e-01 78.9% 86.0%
3788517 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.69 55.0 4.48e-01 85.9% 96.2%
3683169 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.67 54.0 4.78e-01 85.9% 90.0%
3636589 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 50.0 4.61e-01 80.3% 91.1%
3846283 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.61 40.0 4.54e-01 87.3% 94.0%
3561303 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.59 54.0 4.07e-01 100.0% 75.2%
5049855 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 39.0 4.16e-01 87.3% 95.0%
D2 medium residues 77-140
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.84 58.0 3.90e-01 71.9% 46.9%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.80 55.0 4.79e-01 71.9% 54.3%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.80 55.0 4.62e-01 71.9% 50.5%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.79 54.0 3.81e-01 71.9% 56.3%
1j5yA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 53.0 5.31e-01 70.3% 75.0%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 6.10e-01 76.6% 96.3%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 52.0 4.78e-01 70.3% 74.1%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 4.78e-01 70.3% 73.8%
3k9tA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 51.0 5.06e-01 71.9% 66.7%
2h09A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 52.0 5.00e-01 70.3% 71.8%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 51.0 4.74e-01 70.3% 68.8%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.75 52.0 4.33e-01 71.9% 47.2%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 4.62e-01 70.3% 72.6%
1jhgA00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.75 53.0 4.55e-01 75.0% 48.5%
5dukB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.11e-01 71.9% 71.6%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 3.77e-01 70.3% 37.9%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 51.0 5.25e-01 71.9% 78.7%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 5.12e-01 70.3% 75.0%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 3.80e-01 70.3% 40.8%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 4.62e-01 70.3% 73.4%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 3.89e-01 70.3% 36.4%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 4.47e-01 70.3% 55.3%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 5.08e-01 71.9% 73.0%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 4.74e-01 71.9% 96.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 3.74e-01 70.3% 31.7%
1qb2A00 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.72 50.0 4.16e-01 71.9% 55.7%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 3.84e-01 70.3% 43.9%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 3.77e-01 70.3% 32.6%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 4.71e-01 76.6% 76.7%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 4.40e-01 70.3% 53.5%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 49.0 3.66e-01 70.3% 38.4%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 4.53e-01 76.6% 67.0%
6az1a00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 5.34e-01 87.5% 75.0%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 4.53e-01 70.3% 57.7%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.71 47.0 5.24e-01 70.3% 89.6%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.71 48.0 3.87e-01 70.3% 67.5%
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 4.33e-01 70.3% 52.9%
1z05A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 4.70e-01 71.9% 65.3%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 48.0 4.78e-01 70.3% 91.0%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 3.66e-01 71.9% 52.0%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.70 48.0 3.20e-01 71.9% 18.4%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 3.60e-01 70.3% 30.8%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 51.0 5.08e-01 76.6% 98.5%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 46.0 4.65e-01 70.3% 71.2%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.38e-01 71.9% 57.3%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.69 49.0 3.93e-01 76.6% 76.3%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 4.46e-01 71.9% 82.9%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 3.65e-01 70.3% 35.1%
1g2hA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 45.0 4.65e-01 73.4% 78.7%
4nn1A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 42.0 2.96e-01 70.3% 26.3%
2o7tA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 43.0 3.11e-01 73.4% 59.5%
2fa5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 3.66e-01 84.4% 50.4%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 3.96e-01 90.6% 54.9%
4griA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 37.0 3.30e-01 78.1% 100.0%
2qwtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 41.0 3.21e-01 100.0% 53.3%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989117 101.1.1.129 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_4 0.82 58.0 4.93e-01 73.4% 49.0%
4976482 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 53.0 5.29e-01 71.9% 67.7%
5076017 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 54.0 4.12e-01 71.9% 33.6%
3837644 101.1.2.454 alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.78 53.0 4.24e-01 71.9% 37.5%
3740939 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.78 51.0 4.60e-01 70.3% 50.6%
4996857 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 53.0 5.48e-01 71.9% 76.3%
3295746 101.1.2.454 alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.77 53.0 5.02e-01 71.9% 61.3%
3193829 101.1.2.306 alpha arrays › HTH › HTH › winged helix domain › NPR2 0.77 50.0 4.20e-01 70.3% 41.0%
3650286 101.1.2.454 alpha arrays › HTH › HTH › winged helix domain › FAM91_N 0.76 53.0 5.88e-01 71.9% 92.0%
3946248 101.1.3.4 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.76 52.0 4.40e-01 70.3% 46.0%
5073937 101.1.2.899 alpha arrays › HTH › HTH › winged helix domain › Zn_Ribbon_1 0.76 53.0 4.25e-01 71.9% 40.9%
4979451 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 51.0 5.16e-01 70.3% 69.2%
4954539 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 50.0 5.52e-01 70.3% 94.0%
4081576 101.1.6.1 alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.75 53.0 4.63e-01 75.0% 51.6%
4985784 101.1.2.162 alpha arrays › HTH › HTH › winged helix domain › DprA_WH 0.74 49.0 4.97e-01 70.3% 67.7%
3928067 101.1.1.356 alpha arrays › HTH › HTH › Three-helical HTH › HTH_11 0.74 50.0 5.36e-01 70.3% 81.8%
5063104 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 48.0 4.31e-01 70.3% 47.8%
5054826 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 50.0 4.43e-01 70.3% 77.8%
5046581 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 48.0 4.95e-01 70.3% 70.0%
4992785 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.73 51.0 4.33e-01 73.4% 47.6%
4182551 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.73 50.0 3.69e-01 70.3% 29.0%
3946469 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.73 50.0 4.77e-01 71.9% 66.7%
4974091 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 48.0 4.71e-01 70.3% 62.9%
4061597 101.1.6.1 alpha arrays › HTH › HTH › TrpR › Trp_repressor 0.72 51.0 4.65e-01 75.0% 60.0%
4487140 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.72 48.0 4.93e-01 70.3% 73.3%
5071274 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 48.0 4.21e-01 70.3% 48.4%
3988603 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.71 51.0 4.63e-01 76.6% 58.8%
3741967 101.1.15.1 alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS 0.70 48.0 4.31e-01 70.3% 72.9%
3607671 3716.1.1.0 alpha arrays › DUF3349 › DUF3349 › DUF3349 0.70 50.0 4.24e-01 76.6% 69.5%
4058311 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.69 47.0 3.93e-01 70.3% 42.7%
4966784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 5.77e-01 87.5% 95.0%
4999010 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 46.0 4.25e-01 70.3% 54.2%
5076739 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.68 46.0 3.66e-01 70.3% 34.6%
3738604 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 46.0 3.97e-01 73.4% 47.6%
3980266 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.67 48.0 4.22e-01 76.6% 52.6%
4402403 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.66 52.0 5.10e-01 89.1% 78.6%
4001659 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.62 36.0 2.63e-01 100.0% 20.6%
5024801 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 38.0 3.21e-01 84.4% 88.7%