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OR521085.1__WNO28406.1__SEA_PSONYX_99__00099
Bact-VirOR521085.1__WNO28406.1__SEA_PSONYX_99__00099
Identity
- Accession:
- OR521085 ↗
- Kingdom:
- phage
Quality
91.4
mean pLDDT
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-204
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.81 | 66.0 | 6.53e-01 | 96.0% | 81.1% |
| 3syyA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.80 | 70.0 | 7.12e-01 | 97.5% | 92.8% |
| 3k93A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.76 | 69.0 | 6.59e-01 | 93.5% | 95.1% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.74 | 70.0 | 6.69e-01 | 99.0% | 93.3% |
| 3l0aA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.73 | 68.0 | 6.11e-01 | 98.5% | 86.8% |
| 3h4rA00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.69 | 62.0 | 5.98e-01 | 93.5% | 92.7% |
| 5zyuA01 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.67 | 60.0 | 6.07e-01 | 94.0% | 99.5% |
| 4ls9B02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.62 | 29.0 | 3.57e-01 | 77.5% | 68.3% |
| 3u4qA06 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.60 | 47.0 | 4.60e-01 | 81.5% | 90.0% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.58 | 35.0 | 3.86e-01 | 84.5% | 73.5% |
| 1xmxA02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.57 | 38.0 | 4.33e-01 | 88.5% | 89.3% |
| 8dqaA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.56 | 28.0 | 3.75e-01 | 82.5% | 92.9% |
| 3ieyB00 | 3.40.1350.150 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.51 | 34.0 | 3.88e-01 | 89.5% | 88.2% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 31.0 | 3.84e-01 | 94.0% | 95.3% |
| 5ha4A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 29.0 | 3.51e-01 | 84.5% | 83.1% |
| 1ym5A01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 33.0 | 3.85e-01 | 94.0% | 94.9% |
| 1qyaB01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 34.0 | 3.86e-01 | 97.5% | 93.1% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955137 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.84 | 64.0 | 6.74e-01 | 92.0% | 85.6% |
| 4928680 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.83 | 62.0 | 6.42e-01 | 96.5% | 80.0% |
| 4942551 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.82 | 68.0 | 6.60e-01 | 95.5% | 78.6% |
| 222168 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.81 | 66.0 | 6.53e-01 | 96.0% | 81.1% |
| 5076203 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.81 | 63.0 | 6.47e-01 | 92.0% | 82.6% |
| 4929251 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.81 | 65.0 | 6.69e-01 | 94.0% | 87.4% |
| 5021430 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.79 | 65.0 | 6.60e-01 | 93.5% | 87.1% |
| 5012863 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.77 | 65.0 | 6.65e-01 | 92.0% | 88.7% |
| 5012280 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.75 | 61.0 | 6.08e-01 | 92.0% | 81.5% |
| 3716423 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 66.0 | 5.36e-01 | 93.5% | 91.5% |
| 3992384 | 2008.1.1.29 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 | 0.74 | 65.0 | 6.33e-01 | 92.0% | 100.0% |
| 3597341 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.74 | 66.0 | 5.29e-01 | 93.5% | 99.2% |
| 3226148 | 2008.1.1.29 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 | 0.73 | 64.0 | 5.62e-01 | 92.0% | 81.1% |
| 1311130 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.73 | 68.0 | 6.11e-01 | 98.5% | 86.8% |
| 3976411 | 2008.1.1.58 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF3799 | 0.72 | 68.0 | 6.21e-01 | 99.0% | 93.7% |
| 4943737 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 56.0 | 6.22e-01 | 89.5% | 99.4% |
| 5021023 | 2008.1.1.4 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 | 0.72 | 63.0 | 5.78e-01 | 91.0% | 92.4% |
| 3588071 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.72 | 56.0 | 6.23e-01 | 90.5% | 100.0% |
| 4178688 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.71 | 63.0 | 5.07e-01 | 94.0% | 84.3% |
| 4579488 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.71 | 62.0 | 5.11e-01 | 92.0% | 75.0% |
| 5003779 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 66.0 | 5.89e-01 | 97.5% | 90.6% |
| 4536438 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.71 | 63.0 | 4.98e-01 | 94.0% | 73.7% |
| 4597944 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.71 | 62.0 | 5.10e-01 | 92.0% | 75.0% |
| 4986981 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.70 | 61.0 | 5.87e-01 | 90.5% | 88.9% |
| 4031223 | 2008.1.1.204 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2800 | 0.70 | 62.0 | 5.69e-01 | 93.0% | 85.6% |
| 4103907 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.70 | 62.0 | 4.97e-01 | 94.0% | 83.5% |
| None | — | 0.70 | 63.0 | 5.36e-01 | 94.5% | 80.7% | |
| 3457392 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.70 | 63.0 | 5.45e-01 | 94.0% | 88.2% |
| 4943727 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.70 | 62.0 | 5.33e-01 | 93.5% | 81.3% |
| 4365754 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.69 | 60.0 | 5.99e-01 | 94.0% | 88.7% |
| 3950803 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.69 | 63.0 | 5.76e-01 | 95.0% | 80.4% |
| 4958249 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.69 | 62.0 | 5.67e-01 | 94.0% | 87.1% |
| 4324379 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.68 | 61.0 | 5.00e-01 | 94.0% | 78.8% |
| 4403808 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.68 | 62.0 | 4.77e-01 | 95.0% | 81.2% |
| 3502069 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 52.0 | 5.82e-01 | 78.0% | 100.0% |
| 4324924 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 54.0 | 5.97e-01 | 81.5% | 100.0% |
| 4239877 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.68 | 62.0 | 5.17e-01 | 95.0% | 76.6% |
| 5024521 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.68 | 59.0 | 4.78e-01 | 92.0% | 69.9% |
| 4028354 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.68 | 61.0 | 5.37e-01 | 94.0% | 89.9% |
| 3194723 | 2008.1.1.97 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 | 0.67 | 60.0 | 4.97e-01 | 94.5% | 86.0% |
| 5005553 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.67 | 60.0 | 5.34e-01 | 94.0% | 91.1% |
| 3480310 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.67 | 61.0 | 5.87e-01 | 96.5% | 92.9% |
| 4096132 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.66 | 26.0 | 3.34e-01 | 70.5% | 60.0% |
| 3614493 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.65 | 61.0 | 5.23e-01 | 97.5% | 98.3% |
| 4989906 | 2008.1.1.159 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Csa1 | 0.64 | 60.0 | 5.38e-01 | 100.0% | 84.1% |
| 3390489 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.64 | 59.0 | 4.81e-01 | 100.0% | 87.7% |
| 3592513 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 58.0 | 4.83e-01 | 100.0% | 87.5% |
| 3310614 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.62 | 57.0 | 4.81e-01 | 99.5% | 88.4% |
| 3883797 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.62 | 57.0 | 4.89e-01 | 100.0% | 92.8% |
| 3710451 | 2008.1.1.27 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 | 0.62 | 57.0 | 4.75e-01 | 100.0% | 85.3% |
| 4991290 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 56.0 | 5.07e-01 | 96.0% | 92.7% |
| 3186667 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.60 | 55.0 | 4.68e-01 | 100.0% | 83.7% |
| 3580762 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 52.0 | 4.79e-01 | 98.5% | 72.1% |
| 3725765 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.58 | 50.0 | 5.04e-01 | 92.0% | 94.6% |
| 3693544 | 2008.1.1.147 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF29557 | 0.58 | 54.0 | 4.51e-01 | 100.0% | 77.9% |
| 3939159 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.58 | 53.0 | 4.50e-01 | 100.0% | 78.2% |
| 3628154 | 2008.1.1.91 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NARG2_C | 0.58 | 53.0 | 4.53e-01 | 100.0% | 84.9% |
| 3734989 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 46.0 | 4.31e-01 | 88.5% | 75.6% |
| 5078220 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 49.0 | 4.81e-01 | 93.5% | 98.1% |
| 3628796 | 2008.1.1.146 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N | 0.55 | 51.0 | 4.38e-01 | 100.0% | 84.8% |
| 3546715 | 5104.1.1.3 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 | 0.50 | 27.0 | 3.26e-01 | 82.0% | 75.7% |
D2
high
residues 267-342
Domain cluster:
representative