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OR521087.1__WNO28629.1__SEA_MADKILLAH_45__00045
Bact-VirOR521087.1__WNO28629.1__SEA_MADKILLAH_45__00045
Identity
- Accession:
- OR521087 ↗
- Kingdom:
- phage
Quality
68.6
mean pLDDT
Taxonomy
TaxID: 3069509
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-48
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2e9xD02 | 3.40.5.60 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.80 | 68.0 | 6.18e-01 | 100.0% | 88.3% |
| 2ke9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.70 | 61.0 | 5.31e-01 | 100.0% | 94.0% |
| 5of3A00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.69 | 57.0 | 3.43e-01 | 100.0% | 14.4% |
| 2v1rA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 59.0 | 5.17e-01 | 100.0% | 92.5% |
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.67 | 54.0 | 5.42e-01 | 100.0% | 95.7% |
| 4fssB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 57.0 | 5.17e-01 | 100.0% | 95.1% |
| 2vpvA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 54.0 | 4.39e-01 | 100.0% | 53.2% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 54.0 | 4.34e-01 | 100.0% | 82.2% |
| 4mv2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 52.0 | 3.96e-01 | 100.0% | 41.7% |
| 3fjsC00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 52.0 | 4.05e-01 | 100.0% | 44.9% |
| 7zvmA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 52.0 | 4.11e-01 | 100.0% | 49.0% |
| 4nplA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.64 | 54.0 | 3.51e-01 | 100.0% | 31.9% |
| 3cewA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 52.0 | 4.03e-01 | 100.0% | 46.4% |
| 2q30A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 53.0 | 4.32e-01 | 100.0% | 55.7% |
| 4rd7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 53.0 | 3.95e-01 | 100.0% | 42.0% |
| 3danA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 48.0 | 2.71e-01 | 81.4% | 14.4% |
| 3i7dA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 52.0 | 3.67e-01 | 100.0% | 33.1% |
| 2pfwA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 51.0 | 3.98e-01 | 100.0% | 43.2% |
| 2gu9A01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 49.0 | 3.96e-01 | 100.0% | 48.5% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 49.0 | 3.88e-01 | 100.0% | 44.5% |
| 1qwrA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 49.0 | 4.07e-01 | 100.0% | 52.8% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 41.0 | 3.69e-01 | 74.4% | 73.8% |
| 2pytA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.60 | 47.0 | 3.57e-01 | 100.0% | 37.5% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 47.0 | 3.79e-01 | 100.0% | 47.1% |
| 6bbtA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.59 | 47.0 | 3.63e-01 | 100.0% | 48.7% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 41.0 | 3.45e-01 | 72.1% | 64.5% |
| 7tchB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 41.0 | 2.67e-01 | 79.1% | 67.8% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 46.0 | 3.43e-01 | 100.0% | 41.8% |
| 6xmpA01 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.56 | 40.0 | 2.93e-01 | 81.4% | 88.0% |
| 4iv9A03 | 1.10.405.40 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.55 | 41.0 | 2.96e-01 | 88.4% | 95.3% |
| 3tm8B00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 43.0 | 2.69e-01 | 97.7% | 32.6% |
| 3jtnB00 | 3.30.70.1950 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 3.48e-01 | 100.0% | 68.9% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 36.0 | 3.20e-01 | 79.1% | 65.8% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 37.0 | 3.70e-01 | 86.0% | 95.8% |
| 1yb3A00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 39.0 | 2.87e-01 | 100.0% | 55.2% |
| 1qcsA02 | 3.10.330.10 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.52 | 38.0 | 3.07e-01 | 90.7% | 50.5% |
| 2fkbC00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 44.0 | 2.96e-01 | 100.0% | 64.7% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.50 | 35.0 | 2.73e-01 | 100.0% | 29.1% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5066664 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.84 | 73.0 | 7.23e-01 | 97.7% | 97.8% |
| 3716713 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.82 | 72.0 | 6.91e-01 | 100.0% | 94.0% |
| 4981952 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.82 | 71.0 | 6.84e-01 | 100.0% | 90.0% |
| 4927873 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.81 | 71.0 | 6.39e-01 | 100.0% | 76.7% |
| 5024995 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.79 | 68.0 | 6.45e-01 | 100.0% | 88.7% |
| 4967982 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.79 | 66.0 | 6.59e-01 | 95.3% | 97.7% |
| 5000438 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.78 | 67.0 | 5.75e-01 | 100.0% | 65.7% |
| 4007792 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.78 | 66.0 | 4.72e-01 | 100.0% | 34.1% |
| 5015232 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.78 | 67.0 | 6.21e-01 | 100.0% | 83.6% |
| 5063665 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.77 | 68.0 | 6.72e-01 | 100.0% | 97.8% |
| 4983060 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.77 | 66.0 | 5.44e-01 | 100.0% | 56.2% |
| 4358525 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.76 | 67.0 | 6.39e-01 | 100.0% | 90.0% |
| 4004354 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.75 | 64.0 | 4.54e-01 | 100.0% | 34.1% |
| 5036149 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.74 | 64.0 | 6.34e-01 | 100.0% | 100.0% |
| 4944185 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.74 | 64.0 | 5.62e-01 | 100.0% | 70.8% |
| 3595899 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.74 | 65.0 | 5.69e-01 | 100.0% | 66.2% |
| 3610322 | 3529.1.1.1 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault | 0.74 | 64.0 | 5.77e-01 | 100.0% | 71.7% |
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.73 | 62.0 | 6.19e-01 | 100.0% | 93.3% |
| 4230268 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.73 | 61.0 | 6.09e-01 | 97.7% | 100.0% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.72 | 61.0 | 6.04e-01 | 100.0% | 100.0% |
| 5027046 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.71 | 60.0 | 5.80e-01 | 100.0% | 90.0% |
| 4269273 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.71 | 59.0 | 5.87e-01 | 97.7% | 100.0% |
| 3505111 | 4.1.1.318 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26085 | 0.71 | 63.0 | 4.85e-01 | 100.0% | 61.3% |
| 4951587 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 59.0 | 5.68e-01 | 100.0% | 90.0% |
| 5010676 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.70 | 59.0 | 5.71e-01 | 100.0% | 92.0% |
| 5035097 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.70 | 58.0 | 5.78e-01 | 100.0% | 97.8% |
| 4083057 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 58.0 | 5.61e-01 | 100.0% | 90.0% |
| 4939553 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.70 | 58.0 | 5.59e-01 | 100.0% | 88.0% |
| 5001806 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.70 | 58.0 | 5.67e-01 | 100.0% | 91.7% |
| 1346119 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.70 | 58.0 | 5.59e-01 | 100.0% | 90.2% |
| 3923675 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.70 | 58.0 | 5.20e-01 | 100.0% | 89.2% |
| 4536596 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 57.0 | 5.60e-01 | 100.0% | 93.8% |
| 4641420 | 4076.4.1.1 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain › PriS_C | 0.69 | 58.0 | 4.67e-01 | 100.0% | 51.1% |
| 3931418 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 62.0 | 5.51e-01 | 100.0% | 91.7% |
| 4280403 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 54.0 | 5.41e-01 | 97.7% | 97.8% |
| 5068408 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.68 | 54.0 | 5.40e-01 | 95.3% | 93.3% |
| 4593896 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 56.0 | 5.55e-01 | 97.7% | 95.6% |
| 4986946 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.68 | 58.0 | 4.39e-01 | 100.0% | 45.9% |
| 4934987 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.68 | 55.0 | 5.49e-01 | 97.7% | 95.6% |
| 3495656 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 57.0 | 5.19e-01 | 97.7% | 95.0% |
| 4264620 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.68 | 57.0 | 4.23e-01 | 100.0% | 41.7% |
| 4007473 | 10.12.1.115 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30437 | 0.68 | 55.0 | 4.05e-01 | 100.0% | 34.1% |
| 4419456 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.67 | 54.0 | 5.28e-01 | 100.0% | 89.8% |
| 3955678 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.66 | 49.0 | 3.16e-01 | 83.7% | 73.8% |
| 4057802 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.65 | 52.0 | 5.21e-01 | 100.0% | 97.8% |
| 4982370 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.65 | 49.0 | 4.98e-01 | 90.7% | 95.0% |
| 5036140 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.65 | 54.0 | 4.72e-01 | 100.0% | 72.9% |
| 5038458 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.65 | 53.0 | 5.12e-01 | 97.7% | 96.0% |
| 3207903 | 136.1.1.3 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › An_peroxidase | 0.64 | 51.0 | 2.72e-01 | 88.4% | 6.4% |
| 4200990 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 50.0 | 4.91e-01 | 100.0% | 90.0% |
| 3697872 | 136.1.1.3 ↗ | alpha complex topology › Heme-dependent peroxidases › Heme-dependent peroxidases › Heme-dependent peroxidases › An_peroxidase | 0.63 | 50.0 | 2.72e-01 | 88.4% | 6.8% |
| 4943312 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.63 | 46.0 | 2.94e-01 | 83.7% | 63.9% |
| 134743 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.63 | 50.0 | 3.89e-01 | 100.0% | 43.9% |
| 3600578 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 44.0 | 2.45e-01 | 83.7% | 24.1% |
| 4013810 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 45.0 | 3.67e-01 | 100.0% | 78.9% |
| 3365872 | 2.1.1.130 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 | 0.54 | 43.0 | 2.78e-01 | 97.7% | 34.3% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.53 | 38.0 | 3.46e-01 | 79.1% | 78.1% |
| 3736329 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.53 | 43.0 | 2.93e-01 | 97.7% | 41.1% |
| 3278132 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.52 | 40.0 | 2.55e-01 | 90.7% | 26.0% |
| 4428763 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.52 | 41.0 | 2.68e-01 | 100.0% | 34.6% |
| 3997927 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 37.0 | 2.20e-01 | 79.1% | 25.5% |