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OR521087.1__WNO28660.1__SEA_MADKILLAH_76__00076

Bact-Vir

OR521087.1__WNO28660.1__SEA_MADKILLAH_76__00076

Identity

Accession:
OR521087 ↗
Kingdom:
phage

Quality

93.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-76
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.82 62.0 6.74e-01 80.3% 96.7%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 6.54e-01 78.9% 91.7%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 62.0 6.42e-01 80.3% 87.9%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.81 55.0 5.88e-01 70.4% 88.7%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 61.0 5.35e-01 80.3% 68.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 60.0 6.27e-01 80.3% 89.4%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.79 66.0 6.12e-01 88.7% 80.2%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.78 59.0 6.01e-01 78.9% 92.6%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.78 66.0 5.96e-01 90.1% 84.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 57.0 5.43e-01 78.9% 80.7%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 54.0 4.28e-01 76.1% 53.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.49e-01 100.0% 66.7%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.33e-01 93.0% 82.6%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.05e-01 98.6% 54.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.86e-01 97.2% 100.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.60 53.0 3.93e-01 100.0% 46.8%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.58 51.0 4.33e-01 100.0% 92.4%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 46.0 4.12e-01 85.9% 95.9%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 46.0 4.13e-01 85.9% 95.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 42.0 4.25e-01 100.0% 78.1%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.57 41.0 3.22e-01 78.9% 68.5%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 3.53e-01 73.2% 73.5%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.56 46.0 4.20e-01 91.5% 85.4%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 37.0 3.51e-01 85.9% 57.1%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 48.0 4.16e-01 100.0% 79.3%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.27e-01 83.1% 86.6%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.95e-01 95.8% 95.6%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 39.0 2.94e-01 78.9% 85.4%
3ffjA04 2.60.40.4040 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 37.0 3.13e-01 100.0% 40.9%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 36.0 3.16e-01 70.4% 46.8%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 39.0 3.30e-01 83.1% 71.1%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.52 46.0 3.92e-01 100.0% 65.0%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.16e-01 83.1% 74.1%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 40.0 3.32e-01 85.9% 80.2%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.51 38.0 3.06e-01 80.3% 69.0%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 42.0 2.88e-01 91.5% 28.0%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.18e-01 83.1% 67.4%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 3.30e-01 100.0% 45.3%
1a9xA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.51 41.0 3.05e-01 95.8% 64.5%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.51 39.0 3.06e-01 90.1% 68.9%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.19e-01 85.9% 89.4%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.51 40.0 3.42e-01 88.7% 82.0%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 38.0 3.19e-01 81.7% 90.6%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 39.0 3.14e-01 84.5% 59.9%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 37.0 3.48e-01 81.7% 75.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4451993 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.87 67.0 7.30e-01 98.6% 95.0%
5013683 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 62.0 6.80e-01 76.1% 88.3%
5074749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 66.0 6.72e-01 84.5% 82.9%
4499953 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 65.0 7.08e-01 98.6% 95.0%
4280097 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.85 64.0 6.87e-01 100.0% 93.3%
4340758 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 63.0 6.38e-01 78.9% 98.6%
4163851 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.83 66.0 7.11e-01 100.0% 98.3%
4662294 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 60.0 6.81e-01 76.1% 98.2%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.83 67.0 6.99e-01 100.0% 92.3%
5002601 4.1.1.485 beta barrels › SH3 › SH3 › SH3 › DUF6897 0.83 63.0 6.94e-01 80.3% 98.3%
3786412 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.82 58.0 5.58e-01 73.2% 86.3%
3839016 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.82 66.0 6.91e-01 100.0% 92.3%
3036710 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 62.0 6.54e-01 80.3% 93.7%
1482194 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.81 60.0 6.54e-01 78.9% 91.7%
4123180 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.81 62.0 6.11e-01 80.3% 78.7%
5001903 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 61.0 6.20e-01 78.9% 80.0%
1263519 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.81 62.0 6.62e-01 80.3% 95.2%
5004476 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 57.0 6.00e-01 76.1% 80.0%
135648 4.1.1.142 beta barrels › SH3 › SH3 › SH3 › Hfq_1 0.81 62.0 6.45e-01 80.3% 92.3%
4646501 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 58.0 4.36e-01 74.6% 34.2%
139950 4.1.1.126 beta barrels › SH3 › SH3 › SH3 › DUF5608 0.81 58.0 6.42e-01 80.3% 94.6%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.81 61.0 5.91e-01 80.3% 73.8%
3602921 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 54.0 6.17e-01 73.2% 90.9%
3227009 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.80 57.0 5.61e-01 74.6% 84.0%
4932434 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.79 54.0 5.49e-01 70.4% 72.9%
3936053 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.79 57.0 5.76e-01 74.6% 91.4%
4658938 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.78 62.0 5.73e-01 84.5% 66.7%
3590468 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 67.0 6.75e-01 95.8% 92.9%
197051 4.1.1.74 beta barrels › SH3 › SH3 › SH3 › DUF3247 0.78 66.0 5.96e-01 90.1% 84.9%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.78 70.0 6.77e-01 100.0% 95.0%
2167708 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 52.0 5.50e-01 70.4% 89.2%
4936291 4.1.1.487 beta barrels › SH3 › SH3 › SH3 › DUF7205 0.77 56.0 5.85e-01 77.5% 83.1%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 65.0 6.26e-01 98.6% 80.0%
3712219 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.75 53.0 5.54e-01 73.2% 87.7%
4400642 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.74 63.0 5.91e-01 93.0% 76.5%
3971321 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.73 63.0 6.38e-01 98.6% 94.2%
4287411 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.72 62.0 5.97e-01 98.6% 83.7%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 65.0 6.28e-01 100.0% 91.3%
3936885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 55.0 5.71e-01 87.3% 100.0%
4009281 219.1.1.65 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.67 47.0 4.16e-01 73.2% 53.3%
3969500 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.29e-01 100.0% 78.9%
4386702 219.1.1.45 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Mac-1 0.65 57.0 3.79e-01 100.0% 33.1%
3339169 4.1.1.415 beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.62 49.0 4.71e-01 88.7% 89.4%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.68e-01 78.9% 94.5%
7384 219.1.1.21 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 0.60 53.0 3.93e-01 100.0% 46.8%
3484822 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.60 47.0 4.55e-01 88.7% 85.0%
3795384 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 44.0 3.11e-01 78.9% 28.4%
3715477 220.1.1.92 beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.58 39.0 3.24e-01 70.4% 67.4%
4319057 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.57 41.0 3.48e-01 74.6% 50.4%
3281870 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 44.0 3.63e-01 87.3% 82.2%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.56 49.0 4.12e-01 100.0% 85.6%
4544770 2492.1.1.1 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.56 39.0 3.13e-01 73.2% 72.9%
3943844 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.55 38.0 3.44e-01 74.6% 51.0%
3957192 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 42.0 3.53e-01 83.1% 60.0%
3280955 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 47.0 3.39e-01 100.0% 72.0%
5032178 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 42.0 3.04e-01 85.9% 64.7%
3260650 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 37.0 3.24e-01 70.4% 68.2%
4023915 220.1.1.53 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.55 38.0 3.34e-01 74.6% 82.6%
3224349 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.54 43.0 4.01e-01 100.0% 67.4%
5028702 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 40.0 3.27e-01 83.1% 89.3%
5018015 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 41.0 3.33e-01 87.3% 91.0%
3585619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 42.0 3.48e-01 90.1% 91.1%
4147155 11.22.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Dispersin › Dispersin 0.52 38.0 3.54e-01 77.5% 82.2%
3279818 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 40.0 3.30e-01 88.7% 80.6%
4246480 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.51 39.0 3.57e-01 83.1% 63.2%
332272 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.51 38.0 3.06e-01 80.3% 69.0%
3440200 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.50 35.0 2.70e-01 88.7% 30.8%