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OR521087.1__WNO28662.1__SEA_MADKILLAH_78__00078

Bact-Vir

OR521087.1__WNO28662.1__SEA_MADKILLAH_78__00078

Identity

Accession:
OR521087 ↗
Kingdom:
phage

Quality

85.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Corndogvirus› Mycobacterium_phage_MadKillah

TaxID: 3069509

Cluster

View cluster (26 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-141
PDB
Domain cluster: rep: MK967380.1__QDM56058.1__SEA_SLEEPYHEAD_43__00043__D12-108
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19698.6 best DUF6197 45.0 1.70e-11 96.0% 87.4%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hc1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.67 50.0 3.58e-01 97.0% 26.8%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.63 50.0 4.90e-01 100.0% 77.7%
3fxhA00 1.20.120.600 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Crystal structure from the mobile metagenome of halifax harbour sewage outfall 0.61 55.0 5.30e-01 98.0% 95.6%
1ls1A01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.61 49.0 5.12e-01 96.0% 97.8%
3hzjA03 1.10.472.80 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 0.58 41.0 3.65e-01 77.0% 50.3%
3nf2A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 43.0 3.01e-01 81.0% 49.4%
2qyuA02 1.25.40.300 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Putative secreted effector protein 0.54 38.0 3.02e-01 77.0% 36.9%
3flkA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 46.0 3.20e-01 96.0% 94.4%
3o60A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 37.0 3.13e-01 73.0% 46.2%
3cexA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 48.0 4.02e-01 100.0% 66.5%
1a22A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 47.0 3.95e-01 100.0% 88.3%
1wpwA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 43.0 3.05e-01 91.0% 93.8%
1f0jA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.52 40.0 2.75e-01 81.0% 82.3%
1tm9A00 1.10.3960.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein MG354 fold › MG354-like 0.52 42.0 3.84e-01 89.0% 68.6%
2nwlC00 1.10.3860.10 Mainly Alpha › Orthogonal Bundle › Proton glutamate symport protein › Sodium:dicarboxylate symporter 0.51 44.0 2.95e-01 96.0% 40.0%
1jmwA00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.51 45.0 4.00e-01 100.0% 85.6%
3nftA00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.51 45.0 3.34e-01 100.0% 46.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3596375 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.64 34.0 3.19e-01 100.0% 42.4%
3587173 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.83e-01 96.0% 94.7%
4030179 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.56 46.0 4.60e-01 91.0% 83.8%
4933597 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.55 50.0 4.49e-01 100.0% 71.9%
4944595 1197.1.1.1 ↗ alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf 0.54 42.0 3.18e-01 83.0% 41.7%
4947634 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.54 45.0 3.69e-01 95.0% 88.1%
3596194 109.50.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Pre-mRNA-splicing factor 38A › Pre-mRNA-splicing factor 38A 0.53 40.0 3.17e-01 81.0% 45.1%
4945502 3896.1.1.0 ↗ alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase 0.53 46.0 3.65e-01 100.0% 46.8%
3922862 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.53 43.0 4.05e-01 100.0% 72.8%
5054502 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.53 38.0 3.82e-01 95.0% 75.0%
1891620 109.50.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Pre-mRNA-splicing factor 38A › Pre-mRNA-splicing factor 38A › PRP38 0.52 37.0 3.03e-01 74.0% 47.9%
3613980 109.50.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Pre-mRNA-splicing factor 38A › Pre-mRNA-splicing factor 38A › PRP38 0.52 40.0 3.15e-01 82.0% 45.6%
3898895 601.1.1.68 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › RHG29_45_N 0.52 45.0 4.40e-01 100.0% 89.6%
3896661 109.4.1.1486 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS5_N, INTS5_C 0.52 36.0 2.13e-01 72.0% 18.2%
3610933 150.1.1.96 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › PEX11 0.51 46.0 3.54e-01 100.0% 96.1%
4932085 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.51 35.0 3.86e-01 74.0% 93.3%