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OR521087.1__WNO28693.1__SEA_MADKILLAH_109__00109

Bact-Vir

OR521087.1__WNO28693.1__SEA_MADKILLAH_109__00109

Identity

Accession:
OR521087 ↗
Kingdom:
phage

Quality

66.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-135
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.66 50.0 5.21e-01 87.5% 90.0%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 52.0 4.59e-01 88.6% 83.2%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.64 47.0 4.70e-01 77.3% 87.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 52.0 4.79e-01 98.9% 69.2%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 34.0 3.51e-01 70.5% 55.8%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 51.0 3.91e-01 94.3% 98.0%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 50.0 3.74e-01 94.3% 94.4%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.59 42.0 3.30e-01 73.9% 81.7%
1a8dA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 51.0 3.75e-01 97.7% 91.5%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 46.0 3.69e-01 84.1% 65.5%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 47.0 3.62e-01 98.9% 39.9%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 48.0 3.64e-01 98.9% 40.2%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 49.0 3.80e-01 94.3% 70.5%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 40.0 2.85e-01 77.3% 95.0%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.56 50.0 4.22e-01 100.0% 63.8%
4obiA00 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.56 45.0 4.56e-01 88.6% 88.5%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.56 50.0 3.79e-01 100.0% 82.4%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.45e-01 98.9% 66.7%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.55 46.0 3.84e-01 90.9% 81.9%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 43.0 3.75e-01 84.1% 93.3%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.55 38.0 3.64e-01 73.9% 83.8%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 3.43e-01 85.2% 53.6%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.55 41.0 3.92e-01 79.5% 82.4%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 48.0 3.50e-01 98.9% 41.2%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.55 44.0 3.74e-01 87.5% 59.6%
2eigA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.44e-01 94.3% 77.8%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 47.0 3.39e-01 97.7% 39.1%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.53 42.0 3.84e-01 84.1% 94.1%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 38.0 2.62e-01 75.0% 54.2%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.99e-01 92.0% 95.3%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 41.0 3.04e-01 89.8% 56.9%
3gvzA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 41.0 3.04e-01 89.8% 79.7%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 39.0 3.13e-01 85.2% 38.8%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 43.0 2.98e-01 100.0% 93.0%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 43.0 3.99e-01 97.7% 72.6%
1y7bA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.39e-01 100.0% 72.7%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 43.0 2.91e-01 96.6% 93.2%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3648515 241.6.1.2 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › ARPC4 0.71 59.0 4.70e-01 89.8% 80.6%
4029635 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.70 56.0 4.80e-01 85.2% 84.8%
3519579 295.1.1.20 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Intu_longin_3 0.69 55.0 5.72e-01 90.9% 93.8%
5058595 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 47.0 3.16e-01 71.6% 70.4%
3242312 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 46.0 3.21e-01 70.5% 42.4%
3219425 5.1.3.238 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.67 46.0 4.10e-01 70.5% 94.4%
3621363 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 45.0 3.16e-01 70.5% 45.6%
3391302 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 46.0 3.15e-01 71.6% 44.3%
3254772 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 47.0 3.51e-01 73.9% 63.7%
5035423 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.66 56.0 5.75e-01 94.3% 100.0%
3618896 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 42.0 4.87e-01 75.0% 90.6%
1148074 3400.1.1.1 a+b complex topology › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Membrane-associated protein VP24 › Filo_VP24 0.65 53.0 3.95e-01 87.5% 57.7%
3265830 241.6.1.1 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.64 53.0 4.86e-01 89.8% 88.7%
3512735 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.64 45.0 3.31e-01 72.7% 60.9%
3534580 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.64 51.0 4.49e-01 84.1% 71.2%
5792 295.1.1.6 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF1818 0.63 52.0 4.78e-01 98.9% 68.6%
3942738 295.1.1.29 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.62 55.0 4.61e-01 100.0% 72.3%
1734827 3270.1.1.1 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase › DUF2470 0.60 42.0 3.90e-01 71.6% 83.8%
4011809 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.60 42.0 2.70e-01 72.7% 72.5%
2983288 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 41.0 4.10e-01 86.4% 69.7%
3857670 633.23.1.35 alpha bundles › Bromodomain-like › Claudin › Claudin › Clarin-2 0.60 42.0 3.15e-01 72.7% 62.3%
5060431 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.60 52.0 3.46e-01 98.9% 77.4%
4666231 9.1.1.14 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.60 43.0 3.36e-01 78.4% 37.1%
3603411 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 49.0 4.26e-01 97.7% 59.3%
3902892 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.59 52.0 4.01e-01 95.5% 72.1%
4196255 10.1.1.25 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.59 51.0 3.89e-01 94.3% 98.0%
3616294 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 53.0 4.73e-01 98.9% 76.8%
3910955 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 51.0 3.85e-01 95.5% 64.8%
2984295 10.1.1.25 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Toxin_R_bind_N 0.58 50.0 3.85e-01 95.5% 97.1%
3962841 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.58 41.0 3.15e-01 72.7% 50.3%
4012524 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.58 43.0 2.87e-01 77.3% 39.0%
3416871 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 50.0 4.02e-01 94.3% 72.4%
4797890 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.58 39.0 3.96e-01 85.2% 70.6%
3747299 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 52.0 4.09e-01 98.9% 81.1%
3583988 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 48.0 4.46e-01 89.8% 78.2%
3704328 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.57 44.0 4.56e-01 88.6% 85.5%
3177260 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.57 48.0 3.57e-01 94.3% 95.7%
5047088 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 48.0 3.55e-01 92.0% 96.4%
4016127 5.1.4.87 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LVIVD 0.56 41.0 2.69e-01 78.4% 99.8%
3223862 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.56 48.0 3.63e-01 94.3% 70.2%
3006806 10.1.1.27 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Alginate_lyase2 0.56 49.0 3.29e-01 97.7% 51.6%
3925491 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 40.0 3.00e-01 75.0% 63.6%
3991050 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 49.0 3.81e-01 97.7% 78.9%
3960834 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 46.0 4.18e-01 92.0% 99.2%
3804495 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 47.0 3.08e-01 92.0% 90.7%
3398825 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.54 48.0 3.83e-01 98.9% 77.8%
5039391 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 47.0 3.02e-01 95.5% 90.8%
3234981 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.53 38.0 2.98e-01 75.0% 65.2%
5016360 5.1.5.231 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › SBBP 0.53 46.0 3.05e-01 97.7% 96.1%
3927637 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.53 48.0 3.65e-01 98.9% 75.5%
4956163 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.53 42.0 3.41e-01 88.6% 71.7%
3691378 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.02e-01 97.7% 88.1%
3440815 5.1.11.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like 0.52 47.0 3.15e-01 100.0% 69.7%
3609492 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.52 43.0 3.70e-01 90.9% 57.1%
5078711 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 34.0 3.13e-01 86.4% 48.3%
5073723 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 34.0 3.15e-01 90.9% 48.7%
3793430 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.52 37.0 3.65e-01 78.4% 69.5%
3462291 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.52 43.0 2.98e-01 92.0% 58.2%
3224967 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 45.0 3.28e-01 100.0% 49.0%
3967250 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 42.0 2.78e-01 88.6% 77.4%
4381937 2004.1.1.429 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.51 44.0 3.03e-01 100.0% 80.5%
5030040 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.51 41.0 3.02e-01 93.2% 88.0%
3974178 331.10.2.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.50 39.0 3.37e-01 85.2% 83.4%