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OR525703.1__WQN07556.1__X__00021

Bact-Vir

OR525703.1__WQN07556.1__X__00021

Identity

Accession:
OR525703 ↗
Kingdom:
phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Kagunavirus› Escherichia_phage_vB-Eco-KMB36

TaxID: 3093646

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.23e-01 91.7% 88.2%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.11e-01 91.7% 80.7%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.23e-01 93.3% 88.2%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.68 59.0 3.70e-01 100.0% 28.7%
3g4eA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.67 60.0 3.77e-01 100.0% 44.8%
3e5zA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.66 59.0 3.76e-01 100.0% 47.6%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 49.0 4.56e-01 91.7% 65.8%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.63 51.0 4.54e-01 91.7% 92.1%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 44.0 4.61e-01 91.7% 84.6%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.62 43.0 4.46e-01 83.3% 78.9%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 53.0 3.36e-01 100.0% 43.0%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 4.79e-01 88.3% 80.3%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 47.0 4.42e-01 88.3% 77.0%
5bxrA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 48.0 3.80e-01 96.7% 69.5%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 47.0 4.52e-01 91.7% 84.3%
1avwB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 49.0 3.65e-01 98.3% 54.4%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.18e-01 91.7% 65.1%
2fdbN00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 47.0 3.71e-01 100.0% 64.2%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 47.0 4.03e-01 98.3% 68.9%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 45.0 3.57e-01 95.0% 71.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 46.0 4.31e-01 91.7% 76.0%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.56 30.0 3.65e-01 91.7% 90.9%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 36.0 3.54e-01 70.0% 60.6%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 44.0 3.56e-01 96.7% 73.2%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 46.0 3.46e-01 100.0% 44.3%
1vclA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 46.0 3.64e-01 98.3% 51.5%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.55 44.0 3.21e-01 90.0% 44.8%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.59e-01 100.0% 74.0%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.54 43.0 3.73e-01 98.3% 61.7%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 43.0 3.49e-01 100.0% 72.1%
2i52B00 3.30.1300.20 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) 0.53 39.0 3.27e-01 81.7% 86.2%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 41.0 3.59e-01 86.7% 77.9%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 39.0 3.99e-01 100.0% 94.4%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.53 37.0 3.54e-01 73.3% 68.6%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 34.0 3.46e-01 95.0% 70.2%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.15e-01 93.3% 38.3%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3787747 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.72 53.0 3.75e-01 100.0% 25.4%
5027650 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.67 51.0 5.05e-01 85.0% 76.9%
3592525 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 54.0 4.51e-01 91.7% 60.0%
169076 5.1.3.23 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL 0.66 59.0 3.76e-01 100.0% 48.1%
None — 0.65 58.0 3.70e-01 100.0% 41.4%
4960615 5.1.3.277 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7133 0.64 56.0 3.52e-01 100.0% 38.5%
4950809 5.1.3.39 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › TrAA12 0.63 56.0 3.44e-01 100.0% 39.5%
3637504 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.63 55.0 3.19e-01 100.0% 27.2%
5018346 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.62 55.0 3.41e-01 100.0% 40.3%
3656094 239.3.1.1 ↗ beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.62 51.0 3.79e-01 91.7% 65.2%
4047726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.44e-01 90.0% 72.5%
3663326 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.61 42.0 3.56e-01 100.0% 41.9%
4016853 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 50.0 3.68e-01 96.7% 49.4%
1684414 6.1.1.19 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › RicinB_lectin_2 0.59 48.0 3.76e-01 96.7% 67.6%
5078972 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.59 45.0 4.02e-01 83.3% 70.6%
5079876 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.59 50.0 3.28e-01 100.0% 36.9%
3749834 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.58 38.0 3.97e-01 93.3% 76.4%
3907533 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.58 37.0 4.24e-01 80.0% 97.5%
3779051 5.1.4.281 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Hyd_WA, Tectonin 0.57 50.0 3.22e-01 100.0% 47.0%
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.04e-01 91.7% 80.0%
2393363 223.2.1.1 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin 0.57 45.0 3.58e-01 90.0% 63.2%
4170191 6.1.1.7 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CDtoxinA 0.56 43.0 3.27e-01 88.3% 62.4%
3883458 59.1.1.2 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › RNA_pol_Rpc4 0.56 45.0 3.93e-01 93.3% 83.2%
4873985 6.1.1.11 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin 0.56 44.0 3.57e-01 96.7% 69.1%
3249251 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.55 44.0 3.61e-01 100.0% 65.2%
3386959 6.1.1.7 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CDtoxinA 0.55 46.0 3.62e-01 100.0% 52.4%
3068553 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.55 44.0 3.35e-01 96.7% 74.0%
3397645 5.1.4.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.55 45.0 2.95e-01 98.3% 28.4%
2124 6.1.1.7 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › CDtoxinA 0.55 46.0 3.46e-01 100.0% 44.3%
3902876 5.1.3.189 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hyd_WA, Tectonin 0.55 47.0 3.04e-01 100.0% 27.6%
3716426 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.54 46.0 3.55e-01 100.0% 47.6%
3234981 633.23.1.4 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.54 38.0 2.69e-01 93.3% 21.9%
5000056 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.46e-01 91.7% 60.8%
3648661 6.1.1.25 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 0.53 44.0 3.36e-01 100.0% 53.1%
4516448 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 40.0 3.70e-01 85.0% 93.8%
3894449 331.10.2.4 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › DEPDC5_CTD 0.50 41.0 3.54e-01 96.7% 55.2%