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OR525704.1__WQN07680.1__X__00067

Bact-Vir

OR525704.1__WQN07680.1__X__00067

Identity

Accession:
OR525704 ↗
Kingdom:
phage

Quality

92.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Sarkviridae› Kagunavirus› Escherichia_phage_vB-Eco-KMB35

TaxID: 3093645

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 59.0 4.32e-01 100.0% 35.8%
2h1jA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.68 59.0 3.37e-01 100.0% 11.3%
3owaA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.67 45.0 3.37e-01 70.4% 63.8%
3ic3A01 3.30.2370.10 Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase 0.67 44.0 4.14e-01 79.6% 57.8%
1nxzB02 3.40.1280.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain 0.66 44.0 3.05e-01 75.9% 20.8%
2qvaA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 47.0 4.78e-01 81.5% 81.1%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 54.0 3.97e-01 100.0% 66.7%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.62 48.0 4.39e-01 92.6% 64.0%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 42.0 3.95e-01 75.9% 70.6%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.59 52.0 3.65e-01 100.0% 79.5%
8gj8A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 44.0 2.87e-01 100.0% 17.6%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 46.0 4.08e-01 87.0% 60.3%
2jvgA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.57 42.0 3.91e-01 83.3% 72.2%
3mzoB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.55 47.0 3.25e-01 100.0% 49.5%
4gdxA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.50 39.0 3.10e-01 85.2% 40.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1884689 150.1.1.5 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 0.81 61.0 4.42e-01 100.0% 31.6%
4946099 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.74 50.0 4.33e-01 98.1% 45.8%
3486342 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 50.0 3.30e-01 74.1% 17.7%
5016327 605.1.1.2 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.73 50.0 4.59e-01 72.2% 68.6%
3715687 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 49.0 3.14e-01 77.8% 41.9%
3657213 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.67 46.0 4.46e-01 74.1% 63.3%
4932480 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.65 49.0 3.24e-01 92.6% 20.0%
3580410 304.57.1.1 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.65 48.0 3.71e-01 81.5% 69.2%
4623636 3755.3.1.284 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Utp11 0.64 54.0 3.89e-01 92.6% 55.2%
3840013 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.64 50.0 3.30e-01 83.3% 25.4%
5015560 10.28.1.1 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in Zinc finger protein ZPR1 › Jelly-roll domain in Zinc finger protein ZPR1 › jr-ZPR1 0.62 47.0 3.57e-01 79.6% 61.6%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.62 43.0 3.08e-01 72.2% 31.0%
3272845 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.62 53.0 3.17e-01 94.4% 62.4%
4405472 4970.1.1.1 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.60 53.0 4.02e-01 100.0% 80.8%
4067599 192.17.1.22 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › COX3 0.59 49.0 4.33e-01 92.6% 72.5%
437078 3713.1.1.1 ↗ alpha bundles › Small terminase central domain › Small terminase central domain › Small terminase central domain › DNA_Packaging 0.59 50.0 4.30e-01 100.0% 65.9%
3221064 174.1.1.13 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 0.58 50.0 3.73e-01 100.0% 39.3%
4979634 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.57 49.0 3.91e-01 100.0% 80.9%