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OR526523.1__WOZ15050.1__GNVKYODX_CDS73__00073

Bact-Vir

OR526523.1__WOZ15050.1__GNVKYODX_CDS73__00073

Identity

Accession:
OR526523 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-37
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 46.0 3.40e-01 72.2% 52.5%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.64 47.0 3.30e-01 88.9% 40.1%
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.64 48.0 3.83e-01 86.1% 59.0%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.63 52.0 4.73e-01 100.0% 75.5%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 45.0 3.04e-01 75.0% 91.5%
6wo0A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.62 47.0 3.06e-01 97.2% 16.9%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.62 47.0 2.68e-01 86.1% 15.1%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.62 48.0 3.13e-01 100.0% 82.2%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.62 42.0 3.40e-01 75.0% 32.5%
4zg5A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.61 44.0 2.80e-01 91.7% 46.6%
3a0rA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 49.0 3.72e-01 100.0% 34.9%
4jdeA01 2.60.40.3820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 47.0 3.34e-01 97.2% 46.7%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.61 45.0 3.71e-01 86.1% 62.7%
1qlbA04 3.10.20.820 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 44.0 3.41e-01 94.4% 31.9%
1ilvA00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.60 44.0 2.78e-01 88.9% 42.9%
1cp9B02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.59 47.0 3.88e-01 94.4% 49.3%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 45.0 3.27e-01 97.2% 28.9%
2vijA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.59 48.0 3.38e-01 100.0% 30.1%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 45.0 3.35e-01 100.0% 53.7%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 2.68e-01 72.2% 26.1%
1p1hB01 3.30.2360.10 Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain 0.58 39.0 2.61e-01 75.0% 14.2%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 43.0 2.88e-01 100.0% 44.4%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.58 44.0 3.39e-01 88.9% 44.3%
2f7sA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 42.0 2.74e-01 75.0% 15.1%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.58 41.0 2.93e-01 91.7% 78.4%
4ckbD03 2.40.50.830 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 44.0 3.12e-01 100.0% 25.4%
4hstB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.57 44.0 3.79e-01 94.4% 52.9%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.57 41.0 2.92e-01 100.0% 22.8%
3k4zA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 42.0 2.88e-01 97.2% 20.4%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.57 41.0 3.74e-01 80.6% 66.0%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.56 39.0 3.13e-01 80.6% 63.3%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.34e-01 97.2% 34.1%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.56 43.0 2.91e-01 97.2% 19.3%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.56 44.0 3.55e-01 100.0% 42.7%
4n1vA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.56 45.0 3.50e-01 100.0% 44.1%
5mmjj00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 42.0 3.34e-01 97.2% 58.6%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.56 42.0 3.50e-01 100.0% 50.6%
2e4mC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 41.0 2.90e-01 91.7% 34.3%
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.55 43.0 4.02e-01 100.0% 77.4%
3pjvD02 6.20.270.20 Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › LapD/MoxY periplasmic domain 0.55 41.0 3.81e-01 80.6% 54.0%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.54 36.0 3.36e-01 100.0% 48.4%
3u04A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 36.0 2.36e-01 83.3% 12.2%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 37.0 2.78e-01 100.0% 21.1%
3qu1A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 38.0 2.72e-01 100.0% 39.3%
1n9eA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 38.0 2.20e-01 100.0% 56.7%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.50 35.0 3.19e-01 88.9% 59.1%
2x24A03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 43.0 2.48e-01 100.0% 31.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027780 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.79 61.0 5.36e-01 100.0% 56.7%
3562322 355.1.1.14 few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › PF30706 0.77 66.0 4.09e-01 100.0% 65.2%
3676791 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 63.0 5.08e-01 100.0% 50.7%
5018976 295.1.1.53 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 0.74 59.0 5.01e-01 94.4% 60.3%
3618244 11.1.1.620 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TMEM132_6th 0.70 52.0 3.58e-01 83.3% 28.9%
3929525 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 57.0 5.25e-01 100.0% 90.0%
3327993 5.1.4.156 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.68 54.0 3.21e-01 100.0% 11.0%
3902362 2004.1.1.81 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GBP 0.66 46.0 3.01e-01 72.2% 22.4%
4065107 2004.1.1.552 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C 0.64 46.0 2.57e-01 80.6% 71.8%
3741838 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.64 49.0 2.90e-01 97.2% 36.7%
3428777 812.1.1.0 a+b duplicates or obligate multimers › MinE-like › Cell division protein MinE topological specificity domain › Cell division protein MinE topological specificity domain 0.63 49.0 4.58e-01 94.4% 78.0%
4889148 304.51.1.2 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › RAMPs 0.63 47.0 3.06e-01 91.7% 63.4%
3934824 325.1.8.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › ECR1_N 0.62 49.0 4.32e-01 94.4% 100.0%
3504256 922.1.1.0 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat 0.62 47.0 4.62e-01 94.4% 79.1%
1031169 3709.1.1.1 a+b two layers › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › ESX-1 secretion system protein eccB1 linker domains › T7SS_ESX1_EccB 0.61 41.0 3.98e-01 72.2% 55.8%
3537236 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 49.0 3.50e-01 97.2% 38.5%
4033933 9.9.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 0.61 48.0 3.50e-01 94.4% 34.8%
4591455 209.1.2.1 a+b complex topology › C-type lectin-like › C-type lectin-like › Sulfatase-modifying factor-like › FGE-sulfatase 0.61 44.0 2.74e-01 75.0% 12.0%
3677000 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.60 48.0 3.26e-01 100.0% 34.7%
4101278 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.59 46.0 3.37e-01 100.0% 66.4%
4948980 3110.1.1.3 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › AglB_core-like 0.59 44.0 2.92e-01 91.7% 23.7%
3426557 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.59 42.0 2.36e-01 75.0% 5.7%
3790670 304.44.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › Ribosomal_S10 0.58 42.0 2.86e-01 75.0% 18.0%
3104378 101.17.1.3 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_1 0.57 41.0 3.30e-01 83.3% 50.6%
3731446 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.57 40.0 2.69e-01 77.8% 15.1%
4011538 70.3.1.0 beta barrels › beta-clip › SET domain-like › SET domain-like 0.57 41.0 2.55e-01 80.6% 33.5%
7696 812.2.1.1 a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.57 43.0 3.58e-01 86.1% 74.3%
3914722 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 3.83e-01 100.0% 54.7%
3712229 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.56 40.0 2.86e-01 100.0% 75.3%
4552869 2004.1.1.2 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 43.0 2.76e-01 97.2% 18.2%
4941022 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.56 44.0 2.76e-01 83.3% 14.7%
5048593 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 42.0 2.83e-01 72.2% 23.9%
3967728 274.1.1.34 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF4845 0.55 39.0 2.91e-01 83.3% 62.6%
3644345 11.1.1.47 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.55 45.0 3.58e-01 100.0% 41.2%
3959772 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.54 41.0 2.84e-01 100.0% 34.5%
3262417 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 42.0 4.22e-01 100.0% 94.3%
4682079 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.53 38.0 3.28e-01 100.0% 42.4%
3693142 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.53 42.0 2.41e-01 97.2% 8.1%
3705745 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.53 40.0 2.89e-01 100.0% 25.4%
3486348 101.17.1.0 alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.53 40.0 3.54e-01 97.2% 55.4%
3643907 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 39.0 2.80e-01 100.0% 39.4%
4160831 109.4.1.1255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.53 38.0 2.09e-01 80.6% 6.2%
3947849 3609.1.1.4 alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.52 40.0 3.27e-01 100.0% 79.8%
4582665 140.1.1.6 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1,tRNA-synt_1g 0.52 36.0 2.24e-01 77.8% 70.5%
3830346 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.51 39.0 2.31e-01 97.2% 53.0%
3694279 810.1.1.1 a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › ChaC 0.51 36.0 2.75e-01 97.2% 39.3%
5066196 3010.1.1.0 a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains 0.51 38.0 2.78e-01 83.3% 38.8%
4355722 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 36.0 3.01e-01 97.2% 43.2%