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OR538762.1__WOR80349.1__PSP3_gp9c__00009
Bact-VirOR538762.1__WOR80349.1__PSP3_gp9c__00009
Identity
- Accession:
- OR538762 ↗
- Kingdom:
- phage
Quality
70.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Lindbergviridae›
Pbunavirus›
Pseudomonas_phage_PSP3-DeSoir-2023
TaxID: 3085092
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 19-105
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 46.0 | 4.25e-01 | 77.0% | 63.3% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 43.0 | 4.08e-01 | 79.3% | 67.9% |
| 1fx2A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 44.0 | 3.18e-01 | 83.9% | 86.8% |
| 2xi5A00 | 3.40.91.60 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › | 0.55 | 39.0 | 3.07e-01 | 74.7% | 53.8% |
| 3purA02 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.53 | 41.0 | 2.92e-01 | 86.2% | 100.0% |
| 1xjhA00 | 3.90.1280.10 | Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like | 0.52 | 24.0 | 2.78e-01 | 70.1% | 54.8% |
| 3bwnD01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 37.0 | 3.14e-01 | 74.7% | 63.2% |
| 6aqgD02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.52 | 44.0 | 2.91e-01 | 92.0% | 76.9% |
| 4up8A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 43.0 | 2.73e-01 | 92.0% | 77.4% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.50 | 34.0 | 3.37e-01 | 72.4% | 64.9% |
| 1w36B03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 37.0 | 2.54e-01 | 78.2% | 31.4% |
| 7sk7A01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 41.0 | 2.92e-01 | 88.5% | 50.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3732352 | 601.39.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Enhancer of filamentation 1 › Enhancer of filamentation 1 › DUF3433 | 0.60 | 42.0 | 3.31e-01 | 72.4% | 38.3% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.60 | 43.0 | 3.54e-01 | 95.4% | 42.7% |
| 3381794 | 207.1.1.57 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 | 0.60 | 49.0 | 2.77e-01 | 89.7% | 17.5% |
| 3390617 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.59 | 45.0 | 3.90e-01 | 79.3% | 53.8% |
| 3497680 | 5054.1.1.63 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C | 0.58 | 40.0 | 2.69e-01 | 72.4% | 33.3% |
| 4385503 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.55 | 40.0 | 2.83e-01 | 75.9% | 76.7% |
| 3302552 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.53 | 43.0 | 3.66e-01 | 87.4% | 99.3% |
| 4964493 | 5001.1.1.292 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM | 0.53 | 42.0 | 3.02e-01 | 83.9% | 47.2% |
| 4344487 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.53 | 41.0 | 3.30e-01 | 82.8% | 67.9% |
| 3818705 | 263.1.1.1 ↗ | a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF | 0.53 | 39.0 | 4.11e-01 | 79.3% | 85.0% |