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OR553903.1__WNN94808.1__SEA_PHREDRICK_255__00219
Bact-VirOR553903.1__WNN94808.1__SEA_PHREDRICK_255__00219
Identity
- Accession:
- OR553903 ↗
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stanwilliamsviridae›
Gilsonvirus›
Streptomyces_phage_Phredrick
TaxID: 3035387
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-76
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.63 | 49.0 | 4.96e-01 | 97.3% | 84.5% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.61 | 47.0 | 4.28e-01 | 100.0% | 61.4% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 40.0 | 4.12e-01 | 89.0% | 70.8% |
| 7z6eA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 51.0 | 4.37e-01 | 100.0% | 59.0% |
| 3h09A03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.59 | 46.0 | 4.31e-01 | 91.8% | 69.3% |
| 2v4jB02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.58 | 51.0 | 3.84e-01 | 98.6% | 47.0% |
| 1v89A00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 43.0 | 3.78e-01 | 98.6% | 52.5% |
| 2ebmA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 37.0 | 3.09e-01 | 71.2% | 39.1% |
| 1g19A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 36.0 | 2.58e-01 | 93.2% | 22.3% |
| 3rmhB00 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 38.0 | 3.18e-01 | 75.3% | 95.5% |
| 1rm6B02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.53 | 38.0 | 3.33e-01 | 100.0% | 51.4% |
| 3qcpA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 42.0 | 3.31e-01 | 91.8% | 67.8% |
| 3u3gA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 41.0 | 3.29e-01 | 94.5% | 44.3% |
| 2e1qC05 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.51 | 40.0 | 3.44e-01 | 95.9% | 53.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3599909 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 52.0 | 4.62e-01 | 100.0% | 76.4% |
| 3606641 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.60 | 52.0 | 4.60e-01 | 100.0% | 67.3% |
| 3592571 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.58 | 47.0 | 4.52e-01 | 93.2% | 77.6% |
| 3565424 | 220.1.1.22 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C | 0.57 | 45.0 | 3.84e-01 | 100.0% | 52.0% |
| 3614586 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.56 | 39.0 | 3.37e-01 | 87.7% | 45.8% |
| 3708852 | 2003.1.3.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2, NAD_binding_8 | 0.56 | 49.0 | 3.00e-01 | 100.0% | 78.4% |
| 1820963 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.52 | 42.0 | 3.31e-01 | 91.8% | 67.8% |
| 3276783 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.57e-01 | 100.0% | 51.1% |
| 4919518 | 239.5.1.1 ↗ | beta barrels › Ribosomal protein L25-like › 40S ribosomal protein S3A N-terminal domain › 40S ribosomal protein S3A N-terminal domain › Ribosomal_S3Ae | 0.51 | 33.0 | 3.10e-01 | 83.6% | 49.5% |
| 3452316 | 220.1.1.187 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C | 0.51 | 46.0 | 3.48e-01 | 100.0% | 43.0% |
| 3593279 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 40.0 | 2.80e-01 | 90.4% | 80.0% |
| 4030631 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.50 | 43.0 | 3.20e-01 | 100.0% | 55.1% |
| 3472609 | 220.1.1.35 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › IQ_SEC7_PH | 0.50 | 41.0 | 3.29e-01 | 100.0% | 43.0% |