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OR553905.1__WNN94994.1__SEA_MAGRITTE_17__00017
Bact-VirOR553905.1__WNN94994.1__SEA_MAGRITTE_17__00017
Identity
- Accession:
- OR553905 ↗
- Kingdom:
- phage
Quality
44.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 125-178
D2
medium
residues 729-782
D3
medium
residues 1645-1707
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.75 | 51.0 | 4.32e-01 | 71.4% | 100.0% |
| 2k5fA01 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.74 | 57.0 | 5.17e-01 | 82.5% | 90.4% |
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.73 | 63.0 | 5.99e-01 | 93.7% | 95.9% |
| 3m1uA01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.73 | 60.0 | 4.39e-01 | 92.1% | 58.5% |
| 1qhuA01 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.72 | 52.0 | 3.73e-01 | 76.2% | 76.0% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.69 | 55.0 | 4.49e-01 | 93.7% | 53.4% |
| 3isxA02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.68 | 53.0 | 4.67e-01 | 82.5% | 100.0% |
| 1pwaA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.68 | 48.0 | 3.88e-01 | 74.6% | 99.2% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 53.0 | 4.69e-01 | 87.3% | 75.6% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 45.0 | 3.87e-01 | 73.0% | 71.4% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.65 | 55.0 | 5.33e-01 | 95.2% | 100.0% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 54.0 | 4.76e-01 | 93.7% | 73.1% |
| 3cihA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.64 | 51.0 | 4.18e-01 | 90.5% | 74.0% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.63 | 52.0 | 4.64e-01 | 93.7% | 69.9% |
| 1xv2C01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.63 | 54.0 | 4.59e-01 | 100.0% | 96.4% |
| 1whjA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.62 | 45.0 | 3.88e-01 | 77.8% | 78.4% |
| 1oruA00 | 2.40.33.20 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.61 | 50.0 | 3.65e-01 | 93.7% | 100.0% |
| 2bm0A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.61 | 50.0 | 4.25e-01 | 90.5% | 85.4% |
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.61 | 51.0 | 4.87e-01 | 95.2% | 100.0% |
| 1cr5A01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.60 | 46.0 | 4.28e-01 | 82.5% | 100.0% |
| 2v3mA00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.59 | 46.0 | 4.14e-01 | 88.9% | 85.1% |
| 1ikpA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 47.0 | 3.34e-01 | 93.7% | 62.3% |
| 6jpaE00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.58 | 40.0 | 2.95e-01 | 71.4% | 59.8% |
| 5ixcA01 | 3.40.1090.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytosolic phospholipase A2 catalytic domain › Cytosolic phospholipase A2 catalytic domain | 0.58 | 50.0 | 3.03e-01 | 98.4% | 61.2% |
| 1nqnA00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.58 | 43.0 | 3.60e-01 | 82.5% | 92.4% |
| 3mhsA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 40.0 | 3.25e-01 | 74.6% | 76.4% |
| 2dwcB02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.57 | 44.0 | 4.50e-01 | 90.5% | 93.2% |
| 1y7uA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 40.0 | 2.97e-01 | 74.6% | 55.5% |
| 4ienA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 40.0 | 2.99e-01 | 74.6% | 59.1% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 47.0 | 4.68e-01 | 96.8% | 98.5% |
| 2gc9B00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 47.0 | 3.62e-01 | 100.0% | 99.4% |
| 4amwA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.55 | 43.0 | 2.76e-01 | 85.7% | 86.5% |
| 4a2lB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 39.0 | 2.55e-01 | 76.2% | 88.3% |
| 2bf6A02 | 2.40.220.10 | Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 | 0.55 | 43.0 | 4.24e-01 | 85.7% | 100.0% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.94e-01 | 74.6% | 98.3% |
| 2vpzA05 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.54 | 43.0 | 3.27e-01 | 88.9% | 83.0% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 4.01e-01 | 76.2% | 98.2% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 3.82e-01 | 93.7% | 75.0% |
| 2d93A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 44.0 | 3.52e-01 | 93.7% | 47.0% |
| 3kalB05 | 3.30.1490.50 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Glutathione synthase lid domain | 0.53 | 42.0 | 4.28e-01 | 93.7% | 96.6% |
| 1sr4C00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 38.0 | 2.98e-01 | 79.4% | 70.8% |
| 4hltA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 40.0 | 3.10e-01 | 93.7% | 34.4% |
| 1hdhA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 39.0 | 3.69e-01 | 82.5% | 97.4% |
| 2vecA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 42.0 | 3.47e-01 | 95.2% | 49.2% |
| 1hxnA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.51 | 39.0 | 2.77e-01 | 85.7% | 77.6% |
| 1qmeA01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.50 | 35.0 | 3.11e-01 | 73.0% | 58.3% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995678 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 57.0 | 6.09e-01 | 71.4% | 100.0% |
| 4980648 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 58.0 | 5.58e-01 | 77.8% | 88.6% |
| 4998666 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.75 | 56.0 | 3.84e-01 | 79.4% | 65.2% |
| 4967397 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.75 | 55.0 | 5.52e-01 | 77.8% | 93.8% |
| 5013892 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 59.0 | 6.31e-01 | 84.1% | 100.0% |
| 5036616 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.74 | 55.0 | 5.37e-01 | 79.4% | 88.6% |
| 3485387 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 50.0 | 4.70e-01 | 71.4% | 97.3% |
| 2801583 | 9.2.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin | 0.71 | 51.0 | 4.19e-01 | 77.8% | 95.9% |
| 4193599 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 58.0 | 4.91e-01 | 92.1% | 77.1% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.70 | 58.0 | 5.03e-01 | 90.5% | 73.7% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.69 | 57.0 | 5.57e-01 | 90.5% | 100.0% |
| 4256943 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.69 | 57.0 | 4.46e-01 | 93.7% | 50.0% |
| 3489607 | 633.23.1.4 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 | 0.69 | 47.0 | 3.25e-01 | 71.4% | 71.6% |
| 4184958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 55.0 | 4.98e-01 | 87.3% | 80.0% |
| 2814716 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.68 | 56.0 | 4.85e-01 | 88.9% | 72.6% |
| 3973553 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 56.0 | 5.44e-01 | 90.5% | 100.0% |
| 4026678 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.68 | 54.0 | 5.21e-01 | 85.7% | 90.0% |
| 4512995 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.67 | 54.0 | 5.29e-01 | 88.9% | 98.6% |
| 3254963 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.67 | 48.0 | 3.51e-01 | 76.2% | 62.3% |
| 4273414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.67 | 56.0 | 5.46e-01 | 92.1% | 100.0% |
| 3292420 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.67 | 60.0 | 5.33e-01 | 100.0% | 96.7% |
| 4163711 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.67 | 52.0 | 4.72e-01 | 84.1% | 77.6% |
| 5066141 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.66 | 46.0 | 4.62e-01 | 74.6% | 89.2% |
| 5073223 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 54.0 | 4.89e-01 | 92.1% | 88.2% |
| 4999166 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.64 | 51.0 | 4.88e-01 | 88.9% | 100.0% |
| 3625965 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.63 | 51.0 | 4.50e-01 | 90.5% | 85.3% |
| 5046975 | 1.1.7.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C | 0.63 | 52.0 | 4.84e-01 | 92.1% | 95.0% |
| 4580145 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.62 | 46.0 | 4.20e-01 | 79.4% | 75.3% |
| 3648952 | 1.1.7.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C | 0.62 | 50.0 | 4.25e-01 | 88.9% | 82.9% |
| 3479602 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.60 | 41.0 | 2.84e-01 | 71.4% | 70.5% |
| 5060162 | 66.1.1.4 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › FtrD-like | 0.59 | 44.0 | 3.55e-01 | 81.0% | 80.6% |
| 5061951 | 66.1.1.4 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › FtrD-like | 0.59 | 45.0 | 3.65e-01 | 82.5% | 63.6% |
| 3230548 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.59 | 40.0 | 2.82e-01 | 71.4% | 68.4% |
| 3944627 | 10.12.1.85 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 | 0.58 | 48.0 | 3.36e-01 | 100.0% | 28.3% |
| 3193939 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.58 | 44.0 | 3.33e-01 | 93.7% | 32.5% |
| 4006496 | 10.12.1.116 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF30441 | 0.58 | 37.0 | 2.91e-01 | 79.4% | 30.4% |
| 3474631 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.57 | 46.0 | 3.37e-01 | 92.1% | 63.9% |
| 3472947 | 9.1.1.53 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7044 | 0.56 | 39.0 | 3.32e-01 | 74.6% | 100.0% |
| 3408722 | 633.23.1.20 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Atthog | 0.56 | 38.0 | 2.83e-01 | 71.4% | 69.0% |
| 3972386 | 10.12.1.85 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_6 | 0.55 | 45.0 | 3.34e-01 | 100.0% | 33.3% |
| 3478959 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 36.0 | 2.69e-01 | 71.4% | 64.7% |
| 3220064 | 10.4.1.19 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein | 0.53 | 43.0 | 3.79e-01 | 93.7% | 75.0% |
| 166755 | 5.1.3.143 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_3 | 0.53 | 43.0 | 2.66e-01 | 93.7% | 24.6% |
| 3723066 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.53 | 44.0 | 3.18e-01 | 95.2% | 55.4% |
| 4389625 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.53 | 40.0 | 4.27e-01 | 84.1% | 98.2% |
| 3896178 | 633.23.1.1 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin | 0.52 | 35.0 | 2.73e-01 | 71.4% | 69.1% |
| 4010516 | 10.12.1.8 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding | 0.50 | 42.0 | 3.37e-01 | 100.0% | 91.0% |
| 4011343 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 3.35e-01 | 100.0% | 59.3% |
| 4018076 | 11.1.1.18 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LTD | 0.50 | 43.0 | 3.40e-01 | 100.0% | 63.3% |
D4
medium
residues 1749-1876
D5
medium
residues 1877-1991