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OR553905.1__WNN95009.1__SEA_MAGRITTE_32__00032

Bact-Vir

OR553905.1__WNN95009.1__SEA_MAGRITTE_32__00032

Identity

Accession:
OR553905 ↗
Kingdom:
phage

Quality

92.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-46
PDB
Domain cluster: representative
CATH (64)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wadA01 6.20.70.10 Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › 0.76 48.0 5.43e-01 88.9% 96.7%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.72 55.0 4.57e-01 100.0% 46.9%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 62.0 4.17e-01 100.0% 50.0%
3a9gA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.70 51.0 3.00e-01 88.9% 10.1%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 58.0 4.12e-01 100.0% 52.7%
2qecA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 58.0 3.92e-01 100.0% 58.3%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.67 56.0 4.33e-01 95.6% 45.1%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 57.0 3.88e-01 100.0% 53.4%
2dhgA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 52.0 4.43e-01 93.3% 83.5%
2af5A02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.65 48.0 3.47e-01 100.0% 26.8%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.64 53.0 3.61e-01 100.0% 24.9%
1lrzA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 52.0 3.80e-01 100.0% 52.4%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.64 49.0 4.89e-01 95.6% 81.2%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 57.0 4.98e-01 100.0% 84.8%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 43.0 3.77e-01 93.3% 45.8%
4rs2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 52.0 3.57e-01 100.0% 41.7%
6bbtB01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 54.0 3.86e-01 100.0% 35.7%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 53.0 3.45e-01 100.0% 38.3%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.63 53.0 3.91e-01 100.0% 61.9%
1x5oA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 49.0 4.10e-01 93.3% 83.7%
3fk8A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.62 53.0 3.83e-01 97.8% 73.3%
2yh9B00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.62 49.0 4.34e-01 100.0% 58.8%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.62 50.0 3.71e-01 95.6% 59.8%
2xs2A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 48.0 3.99e-01 91.1% 70.1%
3gl3D00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 52.0 3.66e-01 95.6% 72.3%
4bhrA00 3.30.1300.70 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.61 49.0 4.16e-01 97.8% 51.9%
1iicA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 51.0 3.26e-01 100.0% 37.9%
3my2A00 2.60.450.10 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › Lipopolysaccharide (LPS) transport protein A like domain 0.60 53.0 3.83e-01 100.0% 46.8%
3kcmF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 52.0 3.64e-01 95.6% 71.0%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 51.0 3.94e-01 100.0% 50.0%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.38e-01 84.4% 35.6%
3hdcA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 51.0 3.68e-01 95.6% 72.7%
6gc1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.60 52.0 3.43e-01 100.0% 55.5%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 49.0 3.67e-01 97.8% 89.5%
2b5xA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 51.0 3.55e-01 97.8% 70.9%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 48.0 4.32e-01 95.6% 65.2%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 50.0 3.63e-01 100.0% 82.6%
2kucA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 49.0 3.67e-01 100.0% 74.4%
7q4lA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 46.0 3.61e-01 100.0% 81.4%
2f3jA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 45.0 3.66e-01 93.3% 65.3%
4pe5B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 39.0 2.75e-01 100.0% 19.4%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 48.0 3.62e-01 95.6% 40.5%
4hqsA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 49.0 3.45e-01 95.6% 75.6%
3vskA01 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.57 45.0 3.42e-01 100.0% 91.7%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 49.0 3.44e-01 95.6% 32.4%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 47.0 2.76e-01 95.6% 17.3%
6ryvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.05e-01 91.1% 90.8%
2itmA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 48.0 3.06e-01 100.0% 24.1%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 49.0 3.10e-01 100.0% 23.7%
3f44A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 46.0 3.11e-01 100.0% 48.1%
3h6eB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 46.0 3.61e-01 95.6% 53.5%
2fy6A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 49.0 3.43e-01 100.0% 82.5%
3erwF00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 45.0 3.31e-01 95.6% 78.6%
4clcA00 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.55 44.0 3.13e-01 95.6% 78.7%
4aq1A05 2.60.40.3460 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.21e-01 88.9% 64.5%
1ym0A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 42.0 3.25e-01 100.0% 80.2%
1kw3B01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 37.0 2.85e-01 88.9% 27.3%
2zyqA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 37.0 2.84e-01 88.9% 27.3%
3e19B01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 41.0 3.76e-01 93.3% 78.1%
4o5fA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.20e-01 95.6% 68.5%
4ljkG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 41.0 2.81e-01 100.0% 62.9%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.51 38.0 3.21e-01 91.1% 64.6%
1g0sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.51 40.0 2.71e-01 93.3% 42.3%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.29e-01 95.6% 45.4%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932458 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.75 53.0 3.20e-01 97.8% 11.5%
3487488 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.75 61.0 4.23e-01 91.1% 27.3%
3511091 220.1.1.145 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RASGAP 0.70 54.0 5.02e-01 91.1% 66.7%
4979773 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.69 58.0 3.84e-01 100.0% 41.0%
5004589 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.68 58.0 4.36e-01 95.6% 85.5%
3925908 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.67 59.0 3.82e-01 100.0% 24.3%
4952713 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.67 54.0 4.18e-01 97.8% 40.0%
1716885 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.66 55.0 3.93e-01 100.0% 52.0%
3220428 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.66 57.0 3.80e-01 100.0% 41.1%
3208942 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 50.0 4.16e-01 91.1% 77.8%
3829668 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 54.0 2.96e-01 100.0% 5.2%
4445488 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.64 52.0 4.02e-01 93.3% 59.0%
1214409 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.64 45.0 3.91e-01 88.9% 46.1%
5063947 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.63 53.0 3.72e-01 100.0% 48.1%
1411711 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.62 52.0 3.60e-01 100.0% 45.2%
303387 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 51.0 3.35e-01 100.0% 38.3%
3249651 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.61 51.0 3.50e-01 95.6% 53.5%
4987206 2485.1.1.37 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.60 52.0 3.69e-01 95.6% 63.1%
4928301 2485.1.1.45 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_8 0.59 49.0 3.67e-01 95.6% 86.4%
3686111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 46.0 3.78e-01 84.4% 56.2%
3573633 5.1.3.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth 0.59 48.0 2.94e-01 95.6% 28.9%
3243462 387.1.5.0 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.56 42.0 3.96e-01 93.3% 75.4%
4103292 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 49.0 4.15e-01 100.0% 94.7%
4008120 5.1.5.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1481 0.55 48.0 3.53e-01 100.0% 36.7%
3286632 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.55 40.0 3.54e-01 84.4% 51.4%
3500298 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.55 47.0 3.51e-01 100.0% 68.3%
3626150 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.54 47.0 3.43e-01 100.0% 68.5%
3943894 77.1.1.7 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › DUF1481 0.54 47.0 3.45e-01 100.0% 36.0%
3956278 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.53 38.0 2.99e-01 84.4% 32.7%
3438124 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.53 46.0 3.34e-01 100.0% 65.4%
3954149 221.15.1.0 a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase 0.53 43.0 4.06e-01 100.0% 95.0%
3403412 2485.1.1.87 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › UBX7_N 0.53 45.0 3.30e-01 100.0% 66.2%
3952449 2008.1.1.114 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF4143 0.53 45.0 3.46e-01 100.0% 67.3%
3549675 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.52 43.0 2.93e-01 100.0% 28.2%
3964027 2485.1.1.37 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.52 41.0 3.18e-01 100.0% 70.4%
4927165 4187.1.1.1 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB 0.51 42.0 4.05e-01 100.0% 98.2%
4158900 7510.1.1.4 a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › IDH 0.51 41.0 2.81e-01 100.0% 41.5%