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OR553905.1__WNN95057.1__SEA_MAGRITTE_80__00080

Bact-Vir

OR553905.1__WNN95057.1__SEA_MAGRITTE_80__00080

Identity

Accession:
OR553905 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Magritte

TaxID: 3077798

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-61
PDB
Domain cluster: rep: NC_071005.1__YP_010675533.1__PQD14_gp015__00015__D3-56
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zoeB02 2.60.120.1080 Mainly Beta › Sandwich › Jelly Rolls › 0.60 46.0 3.52e-01 86.4% 41.4%
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 50.0 4.14e-01 98.3% 54.1%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.57 49.0 3.75e-01 100.0% 67.3%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.55 44.0 2.65e-01 88.1% 13.4%
5ftzA00 2.70.50.50 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 0.54 44.0 3.32e-01 98.3% 40.7%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 43.0 3.68e-01 100.0% 51.9%
4gucA00 2.60.40.3720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.61e-01 93.2% 51.3%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 3.02e-01 94.9% 32.1%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.52 41.0 2.88e-01 89.8% 40.1%
1xf1A03 2.60.40.1710 Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily 0.51 39.0 3.14e-01 86.4% 58.8%
1wapA00 2.60.40.50 Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like 0.51 37.0 3.65e-01 83.1% 88.2%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 41.0 3.51e-01 88.1% 54.7%
3gbwA00 2.60.120.820 Mainly Beta › Sandwich › Jelly Rolls › PHR domain 0.51 41.0 3.09e-01 93.2% 39.8%
2fboJ02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 3.38e-01 93.2% 64.6%
2zaiA04 2.60.40.3030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.21e-01 93.2% 68.9%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 39.0 3.07e-01 94.9% 87.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4625449 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 51.0 4.43e-01 83.1% 70.0%
5050076 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.64 51.0 3.64e-01 93.2% 54.0%
3898606 11.1.1.217 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Izumo-Ig 0.63 50.0 4.25e-01 86.4% 56.8%
3743821 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.62 51.0 3.82e-01 89.8% 37.9%
3385895 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 44.0 4.05e-01 78.0% 73.8%
3189659 2487.1.1.7 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.61 49.0 3.24e-01 89.8% 98.8%
3629781 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.12e-01 91.5% 51.4%
3854881 3769.1.1.0 ↗ 0.60 48.0 4.67e-01 88.1% 80.0%
3963475 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 45.0 3.90e-01 83.1% 65.3%
5067539 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 47.0 3.83e-01 88.1% 61.7%
3966310 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 44.0 3.76e-01 81.4% 66.3%
3212599 11.1.1.936 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Fn3_nematode 0.58 48.0 3.93e-01 98.3% 72.0%
3740649 11.1.1.498 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LDB19 0.58 48.0 3.66e-01 93.2% 58.6%
5043348 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 44.0 3.27e-01 84.7% 42.4%
5033735 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 52.0 3.99e-01 100.0% 66.9%
4981222 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 3.93e-01 98.3% 65.4%
5034022 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 3.81e-01 94.9% 65.4%
5062603 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 3.91e-01 94.9% 63.3%
3643378 825.1.1.0 ↗ beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins 0.57 35.0 2.56e-01 100.0% 20.6%
5038120 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 3.72e-01 98.3% 66.9%
3593524 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 47.0 3.35e-01 98.3% 40.0%
3501494 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 45.0 3.73e-01 98.3% 53.6%
3795742 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 3.62e-01 93.2% 56.8%
3407300 10.32.1.5 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ephrin_lbd 0.56 44.0 3.20e-01 88.1% 40.6%
3729722 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 43.0 2.94e-01 93.2% 22.2%
4961996 11.1.1.1403 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 0.56 43.0 3.47e-01 86.4% 52.0%
3596318 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 42.0 3.05e-01 83.1% 40.6%
3378824 4210.1.1.2 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › PHL 0.55 43.0 3.90e-01 91.5% 94.4%
4947556 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.26e-01 88.1% 47.3%
2415083 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.71e-01 98.3% 62.0%
3627860 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.54 42.0 3.22e-01 86.4% 35.2%
4969051 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.48e-01 89.8% 60.8%
3492104 10.32.1.41 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 0.54 44.0 3.50e-01 96.6% 51.1%
3318082 11.1.1.872 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ENGASE1_C 0.54 46.0 3.50e-01 100.0% 42.7%
5038908 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.44e-01 86.4% 59.1%
4014712 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 3.73e-01 100.0% 76.7%
3181848 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 3.26e-01 100.0% 88.8%
3451645 10.32.1.210 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_PATL1_C 0.53 44.0 4.09e-01 94.9% 74.7%
3320782 2003.1.1.186 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF7870 0.52 44.0 2.96e-01 96.6% 35.5%
3240947 11.1.1.9 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N 0.52 42.0 3.20e-01 93.2% 56.2%
3388867 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 37.0 2.61e-01 79.7% 29.1%
3775242 871.1.1.1 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 0.52 45.0 3.13e-01 100.0% 37.1%
3995627 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.78e-01 93.2% 63.5%
3625444 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.52 40.0 3.79e-01 83.1% 71.4%
4122460 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.37e-01 98.3% 52.6%
3966724 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 37.0 3.24e-01 78.0% 63.2%
3788475 11.1.1.626 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Bul1_N 0.51 42.0 2.94e-01 98.3% 62.2%
3551050 10.32.1.41 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 0.51 42.0 3.36e-01 96.6% 46.9%
1758438 11.1.1.179 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.50 40.0 3.42e-01 93.2% 88.6%
3334892 11.2.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF7651 0.50 38.0 2.87e-01 89.8% 99.4%
4857421 11.1.1.361 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_123_N_2 0.50 42.0 3.33e-01 100.0% 73.5%
3627153 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.35e-01 100.0% 62.2%