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OR553905.1__WNN95094.1__SEA_MAGRITTE_143__00117

Bact-Vir

OR553905.1__WNN95094.1__SEA_MAGRITTE_143__00117

Identity

Accession:
OR553905 ↗
Kingdom:
phage

Quality

75.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Magritte

TaxID: 3077798

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-37
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.78 62.0 5.35e-01 94.6% 58.1%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.76 61.0 5.77e-01 100.0% 76.1%
1px5A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.71 53.0 3.62e-01 86.5% 76.2%
4dwsA01 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.70 54.0 3.86e-01 91.9% 74.0%
3cngA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.69 54.0 5.53e-01 94.6% 100.0%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 47.0 4.07e-01 97.3% 43.8%
4nozB01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 44.0 3.95e-01 75.7% 46.3%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.66 45.0 3.64e-01 73.0% 34.7%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 47.0 4.13e-01 100.0% 49.2%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 50.0 3.54e-01 100.0% 27.4%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 3.77e-01 97.3% 43.8%
2oyzA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 44.0 3.35e-01 75.7% 30.9%
1tv8B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 49.0 2.90e-01 100.0% 11.0%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.60 42.0 3.96e-01 78.4% 60.0%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 40.0 3.99e-01 73.0% 64.1%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.72e-01 100.0% 47.8%
3r4qA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 46.0 3.32e-01 100.0% 31.1%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.58 40.0 3.00e-01 81.1% 26.7%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 42.0 2.84e-01 97.3% 48.5%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.56 43.0 2.92e-01 89.2% 85.8%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.56 44.0 3.44e-01 100.0% 50.0%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 39.0 2.47e-01 73.0% 17.6%
1xi7A00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.55 38.0 3.70e-01 81.1% 83.0%
2cg7A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.54 37.0 3.56e-01 70.3% 63.0%
4qfkA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 37.0 2.77e-01 73.0% 29.6%
1dpeA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 36.0 2.70e-01 73.0% 28.6%
5yhgA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 42.0 2.60e-01 100.0% 58.7%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 3.80e-01 97.3% 77.4%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.52 38.0 3.53e-01 100.0% 80.6%
1xqaA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 40.0 3.04e-01 100.0% 34.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.51 38.0 3.58e-01 100.0% 65.4%
1xocA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 40.0 2.79e-01 100.0% 32.9%
3zs6A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 41.0 2.77e-01 100.0% 35.9%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.52e-01 100.0% 64.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 39.0 3.80e-01 100.0% 80.9%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3646226 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.82 67.0 5.25e-01 94.6% 45.0%
4960549 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 69.0 6.31e-01 97.3% 72.0%
4955965 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.82 63.0 5.77e-01 97.3% 64.0%
4989457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 63.0 5.74e-01 94.6% 64.0%
3247046 377.1.1.83 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.81 66.0 6.48e-01 100.0% 87.5%
3819668 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.80 64.0 6.12e-01 100.0% 77.3%
5044272 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.80 63.0 5.76e-01 100.0% 66.0%
5054531 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.80 71.0 5.09e-01 100.0% 39.0%
3383223 375.1.1.53 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.80 65.0 5.76e-01 100.0% 63.6%
4944150 377.2.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins 0.79 65.0 6.65e-01 97.3% 100.0%
4927636 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 70.0 6.82e-01 100.0% 92.5%
3673863 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.79 68.0 5.32e-01 100.0% 47.5%
3595832 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.78 63.0 5.63e-01 100.0% 63.6%
3798357 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 66.0 5.33e-01 100.0% 52.0%
3623599 377.1.1.83 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.78 60.0 6.13e-01 91.9% 94.3%
3392762 377.1.1.83 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF26040 0.78 61.0 6.23e-01 91.9% 94.3%
4947252 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 60.0 5.72e-01 100.0% 73.3%
5039125 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.78 66.0 5.55e-01 100.0% 56.9%
3580045 375.1.1.217 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26040 0.77 61.0 6.24e-01 97.3% 100.0%
5026901 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 62.0 5.37e-01 94.6% 70.0%
4976753 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 64.0 5.77e-01 100.0% 72.7%
4289796 375.1.1.60 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.77 64.0 5.43e-01 100.0% 66.2%
5030311 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 64.0 5.76e-01 100.0% 69.1%
4026416 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.76 64.0 5.18e-01 100.0% 50.7%
3932430 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.76 63.0 5.25e-01 100.0% 54.3%
8012 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.76 61.0 5.66e-01 100.0% 71.4%
5038361 4294.1.1.13 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB 0.75 63.0 6.00e-01 100.0% 84.4%
5032137 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.75 61.0 5.09e-01 97.3% 51.4%
3670700 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 60.0 5.91e-01 100.0% 87.5%
None — 0.74 60.0 3.57e-01 100.0% 11.8%
4992408 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 61.0 5.78e-01 97.3% 82.2%
4933213 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.74 60.0 5.05e-01 100.0% 54.3%
3505640 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.74 60.0 5.26e-01 100.0% 60.0%
3189994 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.74 61.0 4.65e-01 100.0% 40.0%
4956733 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.73 61.0 5.08e-01 100.0% 68.6%
4278890 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.72 57.0 5.81e-01 100.0% 97.1%
3702861 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.72 61.0 5.42e-01 100.0% 65.5%
4153913 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 59.0 4.67e-01 100.0% 45.9%
4948153 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 57.0 4.85e-01 100.0% 68.6%
3882882 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.71 48.0 5.09e-01 70.3% 86.7%
2426538 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.71 58.0 4.16e-01 100.0% 38.0%
5078768 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.70 59.0 3.92e-01 100.0% 73.1%
4972400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 55.0 5.36e-01 100.0% 91.1%
3308072 375.1.1.53 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 0.70 57.0 5.64e-01 100.0% 90.0%
3943642 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.70 58.0 5.50e-01 100.0% 80.0%
3208203 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.69 56.0 5.04e-01 100.0% 65.5%
3935170 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.69 56.0 5.41e-01 100.0% 80.0%
3898522 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 59.0 5.42e-01 100.0% 76.0%
3882464 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 59.0 4.76e-01 100.0% 50.7%
3706282 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 50.0 3.55e-01 100.0% 25.0%
3982469 375.1.1.130 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_Tnp_IS1 0.68 55.0 5.42e-01 94.6% 90.0%
3414906 375.1.1.148 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C 0.68 53.0 5.14e-01 94.6% 84.4%
3976145 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 56.0 5.33e-01 100.0% 80.0%
3374952 375.4.1.5 ↗ few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › RPA_interact_C 0.67 55.0 4.42e-01 100.0% 50.6%
5079258 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.64 43.0 4.18e-01 75.7% 57.8%
3999354 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.62 45.0 3.05e-01 94.6% 19.4%
3573645 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.62 48.0 2.97e-01 100.0% 18.6%
3328891 4.1.1.296 ↗ beta barrels › SH3 › SH3 › SH3 › TDBD 0.60 49.0 4.23e-01 100.0% 58.5%
4203984 101.8.1.1 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 0.60 51.0 2.85e-01 100.0% 6.9%
5014374 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.60 51.0 2.85e-01 100.0% 6.9%
3905824 7556.1.1.1 ↗ a/b three-layered sandwiches › Fe-only hydrogenase › Fe-only hydrogenase › Fe-only hydrogenase › Fe_hyd_lg_C 0.59 46.0 2.77e-01 100.0% 15.0%
3356481 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.59 45.0 3.69e-01 100.0% 42.2%
3684567 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.58 45.0 4.00e-01 100.0% 70.8%
3655170 375.13.1.2 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › zf-C4_Topoisom 0.58 47.0 4.29e-01 100.0% 83.6%
1545070 358.2.1.0 ↗ a+b complex topology › SRCR-like › A heparin-binding domain › A heparin-binding domain 0.58 40.0 3.00e-01 81.1% 26.7%
4969276 2011.2.1.1 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 0.58 46.0 2.92e-01 97.3% 14.9%
3755591 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 44.0 3.91e-01 100.0% 72.3%
4269256 4.1.1.245 ↗ beta barrels › SH3 › SH3 › SH3 › SspH 0.55 40.0 3.60e-01 100.0% 51.7%
4986717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 41.0 3.68e-01 100.0% 89.2%
3881121 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 41.0 3.18e-01 100.0% 36.0%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.52 40.0 3.54e-01 97.3% 56.9%
3671396 4.1.1.316 ↗ beta barrels › SH3 › SH3 › SH3 › PUB62-63_C 0.50 38.0 3.34e-01 100.0% 56.2%