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OR553905.1__WNN95097.1__SEA_MAGRITTE_146__00120

Bact-Vir

OR553905.1__WNN95097.1__SEA_MAGRITTE_146__00120

Identity

Accession:
OR553905 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-25_37-89
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.75 50.0 4.90e-01 94.5% 63.6%
2raaA00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.75 55.0 4.07e-01 94.5% 31.5%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.74 48.0 4.73e-01 90.4% 62.0%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.71 45.0 4.14e-01 94.5% 51.6%
1lj2A00 1.20.5.970 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein 0.69 48.0 4.18e-01 72.6% 58.5%
2q0oC00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.68 45.0 4.27e-01 90.4% 57.0%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.64 57.0 5.36e-01 98.6% 97.7%
1f1mA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.64 48.0 3.71e-01 80.8% 85.2%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 45.0 4.88e-01 86.3% 90.2%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 55.0 4.40e-01 97.3% 50.0%
1d8jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.89e-01 89.0% 88.9%
2v9vA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.85e-01 80.8% 94.2%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.62 44.0 4.75e-01 84.9% 90.2%
2id3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 38.0 4.42e-01 75.3% 91.8%
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 37.0 4.36e-01 71.2% 93.6%
2dofA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.61 48.0 4.60e-01 95.9% 74.1%
1wdzA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.61 47.0 3.24e-01 80.8% 27.7%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.61 52.0 4.89e-01 97.3% 80.4%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 38.0 4.28e-01 71.2% 90.0%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 4.68e-01 86.3% 98.1%
3qqaA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 39.0 4.23e-01 78.1% 83.1%
2fd5A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 36.0 4.22e-01 71.2% 91.7%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 46.0 3.17e-01 83.6% 59.5%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 46.0 4.18e-01 91.8% 61.6%
8sbeA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.59 50.0 3.78e-01 98.6% 74.5%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 41.0 3.48e-01 75.3% 76.6%
1fs0G02 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.58 47.0 4.37e-01 84.9% 78.7%
4ioeA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.58 47.0 4.41e-01 84.9% 87.4%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 45.0 3.83e-01 83.6% 66.4%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 4.24e-01 91.8% 84.8%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 48.0 3.58e-01 100.0% 34.5%
2a3qA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.57 41.0 3.53e-01 82.2% 48.7%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.57 49.0 3.71e-01 91.8% 68.3%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 47.0 4.07e-01 90.4% 61.4%
3cdlA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 39.0 4.32e-01 82.2% 98.1%
5gp9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 35.0 4.02e-01 75.3% 91.7%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 41.0 4.21e-01 87.7% 81.4%
3tacB03 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 43.0 4.18e-01 86.3% 74.1%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.55 44.0 3.94e-01 84.9% 92.2%
1xo0A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.55 43.0 3.71e-01 86.3% 55.0%
2fbqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 42.0 3.17e-01 87.7% 44.6%
7zcvA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 29.0 3.09e-01 72.6% 57.1%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 48.0 4.28e-01 97.3% 96.2%
5g5gA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.53 41.0 3.90e-01 86.3% 75.6%
3dv9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 38.0 3.88e-01 93.2% 81.4%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 47.0 3.98e-01 100.0% 87.5%
2oo2A00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.52 38.0 3.81e-01 78.1% 73.7%
3b81A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 44.0 3.44e-01 100.0% 75.4%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 39.0 3.61e-01 80.8% 77.9%
7p2yd01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.50 40.0 3.68e-01 87.7% 69.7%
3pasA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.50 41.0 3.23e-01 100.0% 45.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939128 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.75 62.0 6.38e-01 95.9% 92.9%
3340029 101.1.1.176 alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.74 62.0 6.23e-01 100.0% 90.7%
3222477 101.1.2.712 alpha arrays › HTH › HTH › winged helix domain › FNIP_C 0.72 50.0 3.42e-01 72.6% 66.0%
5012559 6028.1.1.0 alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.71 60.0 6.03e-01 98.6% 90.7%
5072863 2004.1.3.1 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.70 55.0 4.06e-01 94.5% 33.5%
3547935 3204.1.1.0 extended segments › N-terminal regulatory segment of carnitine palmitoyltransferase 1A › N-terminal regulatory segment of carnitine palmitoyltransferase 1A › N-terminal regulatory segment of carnitine palmitoyltransferase 1A 0.69 48.0 4.20e-01 72.6% 52.7%
3244407 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.69 48.0 5.21e-01 93.2% 90.0%
3885941 101.1.1.132 alpha arrays › HTH › HTH › Three-helical HTH › SENP3_5_N 0.69 55.0 5.65e-01 89.0% 92.9%
4626177 101.32.1.0 alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin 0.68 59.0 5.80e-01 95.9% 98.8%
3598778 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.68 56.0 5.78e-01 93.2% 95.7%
3594667 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 52.0 4.05e-01 93.2% 39.3%
3251599 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.58e-01 94.5% 89.3%
3291596 150.5.1.52 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE 0.66 47.0 4.18e-01 90.4% 54.0%
3906103 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.64 50.0 5.28e-01 93.2% 98.5%
4286197 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.63 47.0 4.54e-01 84.9% 70.0%
2329732 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.63 50.0 3.93e-01 84.9% 69.4%
4946656 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.62 47.0 3.99e-01 80.8% 96.7%
3617759 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.62 43.0 4.44e-01 82.2% 77.1%
4511470 4177.1.1.78 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › TrbL 0.62 46.0 3.24e-01 79.5% 48.4%
3838172 2.21.1.3 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › HTH_OrfB_IS605 0.62 51.0 3.96e-01 93.2% 43.5%
3705215 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.62 49.0 5.09e-01 89.0% 98.5%
3406963 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.62 45.0 2.99e-01 87.7% 19.0%
3709824 101.21.1.0 alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit 0.62 49.0 5.10e-01 89.0% 98.5%
4115902 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.61 43.0 4.77e-01 86.3% 100.0%
5083132 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 4.48e-01 86.3% 80.0%
3825757 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.60 45.0 4.74e-01 89.0% 92.3%
3166133 101.1.2.103 alpha arrays › HTH › HTH › winged helix domain › SelB-wing_2 0.60 45.0 4.62e-01 82.2% 94.3%
3577448 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.59 48.0 4.47e-01 84.9% 86.5%
3705890 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 45.0 4.11e-01 80.8% 76.8%
3522050 109.3.1.131 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › INT_SG_DDX_CT_C 0.59 42.0 4.26e-01 86.3% 74.3%
3206967 2.9.1.1 beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.59 49.0 3.10e-01 94.5% 98.6%
3169408 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.59 46.0 4.67e-01 93.2% 88.6%
3686642 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.58 50.0 3.89e-01 93.2% 94.2%
3174361 101.1.2.312 alpha arrays › HTH › HTH › winged helix domain › MSC 0.58 47.0 3.33e-01 90.4% 43.7%
5061261 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.58 44.0 4.65e-01 98.6% 98.4%
3730549 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.58 49.0 3.09e-01 94.5% 19.7%
5079569 605.6.1.0 alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.57 46.0 4.40e-01 100.0% 74.1%
3938350 604.1.1.67 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_5 0.57 54.0 4.67e-01 100.0% 91.4%
3392253 103.1.1.1 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA 0.57 52.0 4.35e-01 100.0% 67.5%
5066728 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.57 46.0 4.35e-01 91.8% 74.1%
3482901 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.56 40.0 3.96e-01 76.7% 70.0%
4122163 2006.1.2.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases › UPF0160 0.56 48.0 3.76e-01 97.3% 93.3%
3508184 101.1.2.103 alpha arrays › HTH › HTH › winged helix domain › SelB-wing_2 0.56 46.0 4.58e-01 90.4% 92.0%
3400200 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.56 51.0 4.23e-01 100.0% 88.8%
3882493 633.23.1.34 alpha bundles › Bromodomain-like › Claudin › Claudin › CD20 0.55 50.0 3.89e-01 100.0% 83.2%
3506153 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.55 44.0 4.26e-01 86.3% 85.5%
3281341 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.55 40.0 3.98e-01 83.6% 72.5%
3853566 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.55 46.0 3.88e-01 89.0% 73.0%
3715173 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.55 47.0 4.03e-01 91.8% 71.8%
3756853 174.1.1.43 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › CD20 0.55 50.0 3.64e-01 100.0% 64.7%
3321594 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 43.0 3.47e-01 90.4% 43.3%
3959168 129.1.1.18 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › PDH_C 0.54 48.0 4.02e-01 100.0% 65.6%
4000466 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.53 40.0 3.79e-01 80.8% 77.8%
3419147 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.53 44.0 4.15e-01 90.4% 77.8%
3401196 102.1.1.16 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 0.52 44.0 4.02e-01 100.0% 71.4%