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OR553905.1__WNN95129.1__SEA_MAGRITTE_178__00152

Bact-Vir

OR553905.1__WNN95129.1__SEA_MAGRITTE_178__00152

Identity

Accession:
OR553905 ↗
Kingdom:
phage

Quality

87.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microbacterium_phage_Magritte

TaxID: 3077798

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-57
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jubA01 3.30.160.860 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 36.0 3.84e-01 91.5% 81.1%
1l1oC02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 37.0 3.95e-01 87.2% 89.5%
1vwxp00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 37.0 3.12e-01 76.6% 47.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.52 43.0 4.25e-01 100.0% 92.3%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 39.0 3.48e-01 85.1% 63.0%
2pvjA01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 43.0 2.85e-01 100.0% 23.7%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 43.0 2.89e-01 100.0% 26.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028391 375.1.1.13 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.60 42.0 3.47e-01 76.6% 46.2%
5005813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.87e-01 76.6% 70.0%
4976214 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.56 37.0 2.57e-01 70.2% 18.0%
4945986 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.56 41.0 2.73e-01 93.6% 18.1%
3338126 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 37.0 2.44e-01 72.3% 50.2%
3454595 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 37.0 3.43e-01 70.2% 50.8%
1949611 375.1.1.13 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae 0.53 38.0 3.17e-01 76.6% 47.3%
2642976 375.1.1.206 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae, Zn_ribbon_IS1595 0.52 39.0 3.36e-01 85.1% 54.8%
4589595 4.1.1.447 ↗ beta barrels › SH3 › SH3 › SH3 › PF28065 0.51 38.0 3.50e-01 85.1% 75.4%