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OR553905.1__WNN95135.1__SEA_MAGRITTE_184__00158

Bact-Vir

OR553905.1__WNN95135.1__SEA_MAGRITTE_184__00158

Identity

Accession:
OR553905 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-44
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 52.0 4.18e-01 100.0% 39.5%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 42.0 3.53e-01 83.3% 37.0%
6gnaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 53.0 3.57e-01 100.0% 21.5%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 52.0 3.82e-01 100.0% 30.2%
3pdwA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 37.0 2.82e-01 81.0% 22.9%
2qjyB01 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.65 56.0 3.55e-01 100.0% 39.8%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.65 59.0 3.91e-01 100.0% 27.5%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.64 48.0 3.37e-01 83.3% 49.7%
1amuA01 3.40.50.980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 52.0 3.51e-01 92.9% 23.6%
2fq4A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 51.0 3.75e-01 100.0% 79.6%
2wv2A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.63 53.0 3.04e-01 95.2% 9.0%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 3.62e-01 100.0% 31.4%
3l0aA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.62 47.0 2.91e-01 83.3% 17.7%
2lg1A01 1.10.287.2510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 44.0 3.84e-01 92.9% 47.1%
1nu3A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 49.0 3.48e-01 100.0% 27.6%
7cr6D02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.62 51.0 3.31e-01 100.0% 48.9%
4xr7F02 1.10.287.3700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 46.0 3.74e-01 85.7% 45.6%
4ntdA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 46.0 3.06e-01 100.0% 18.8%
5c9iD01 1.10.439.10 Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 0.60 48.0 3.39e-01 100.0% 39.1%
4w6vA00 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.60 45.0 2.65e-01 97.6% 64.4%
6opmD01 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.59 45.0 2.97e-01 100.0% 97.5%
3bkhA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.58 49.0 3.30e-01 100.0% 36.8%
2o2zA00 3.40.50.10680 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CofD-like domains 0.57 40.0 2.43e-01 83.3% 10.3%
3lfuA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.57 46.0 4.00e-01 100.0% 57.1%
1ileA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.57 46.0 3.11e-01 100.0% 86.7%
3dl1A01 1.10.472.150 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Glucose-regulated metallo-peptidase M90, N-terminal domain 0.57 46.0 3.54e-01 92.9% 43.4%
2ggsA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 46.0 2.93e-01 90.5% 84.9%
4i9fA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 48.0 3.59e-01 100.0% 87.5%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 45.0 3.24e-01 100.0% 29.1%
3fbsB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 48.0 3.11e-01 100.0% 44.1%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.09e-01 92.9% 44.7%
4o7iA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.54 43.0 2.88e-01 97.6% 21.4%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.53 45.0 3.81e-01 100.0% 57.3%
4dg9A03 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.53 41.0 3.57e-01 95.2% 89.9%
2aboA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.53 41.0 3.03e-01 95.2% 96.2%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 45.0 2.81e-01 100.0% 37.4%
5k5iA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 38.0 3.61e-01 81.0% 88.5%
4dqxB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 42.0 2.69e-01 100.0% 85.5%
2c54A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 37.0 2.42e-01 83.3% 16.9%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 44.0 2.70e-01 100.0% 27.5%
2oycA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 41.0 3.07e-01 100.0% 85.2%
1zjjA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.50 40.0 3.06e-01 100.0% 85.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3924725 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.73 59.0 3.81e-01 100.0% 77.3%
3659467 243.1.1.45 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › S6PP_C 0.71 57.0 4.18e-01 100.0% 32.0%
4127245 152.1.2.1 alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RNA polymerase omega subunit › RNA_pol_Rpb6 0.71 56.0 4.96e-01 95.2% 60.0%
3930747 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.70 56.0 3.23e-01 100.0% 8.3%
3248839 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 55.0 3.99e-01 100.0% 30.8%
4203412 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.68 57.0 3.86e-01 92.9% 26.0%
3248657 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.67 60.0 4.22e-01 100.0% 73.6%
3788956 5081.1.1.2 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 0.66 56.0 3.48e-01 100.0% 17.4%
1005039 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.66 60.0 3.93e-01 100.0% 26.6%
4880222 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.64 52.0 3.62e-01 92.9% 26.7%
3084245 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.64 53.0 3.60e-01 92.9% 24.8%
4025011 650.1.1.0 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain 0.64 52.0 3.89e-01 100.0% 36.7%
3594317 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.64 55.0 3.80e-01 100.0% 29.3%
3413390 5050.1.1.2 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.64 49.0 3.08e-01 100.0% 14.5%
3241816 5050.1.1.2 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.63 50.0 3.12e-01 100.0% 15.4%
4125023 2006.1.4.4 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.62 50.0 3.44e-01 100.0% 24.7%
1834379 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.62 45.0 3.94e-01 81.0% 90.9%
3250458 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.62 44.0 2.95e-01 90.5% 17.1%
3620358 192.29.1.50 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PTPLA 0.61 44.0 2.87e-01 81.0% 44.1%
4932613 103.8.1.1 alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II 0.61 50.0 4.29e-01 95.2% 60.0%
3706007 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.61 45.0 2.86e-01 78.6% 20.5%
3819780 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.61 51.0 4.00e-01 100.0% 44.0%
3291354 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.61 46.0 3.12e-01 92.9% 20.0%
3176868 129.1.1.102 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › PF30133 0.60 50.0 3.46e-01 100.0% 40.0%
3110831 5081.1.1.0 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like 0.60 50.0 3.22e-01 100.0% 19.1%
4023971 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.59 50.0 3.18e-01 100.0% 19.7%
None 0.59 50.0 3.27e-01 100.0% 63.1%
4943128 103.8.1.3 alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_C 0.59 46.0 4.07e-01 95.2% 60.0%
4011300 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.59 44.0 3.44e-01 100.0% 37.8%
3931682 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.58 42.0 3.20e-01 85.7% 30.4%
3711022 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.58 46.0 2.72e-01 90.5% 38.4%
3692977 109.21.1.1 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleopor_Nup85 0.58 49.0 2.75e-01 92.9% 8.3%
3742842 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.58 44.0 2.96e-01 92.9% 20.0%
4995144 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.58 45.0 3.13e-01 100.0% 22.4%
3176201 3567.1.1.159 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PF29918 0.58 40.0 2.67e-01 97.6% 15.2%
2843119 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.58 49.0 3.88e-01 100.0% 45.7%
3173752 2002.1.1.192 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase 0.58 49.0 2.71e-01 95.2% 73.8%
4566325 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.58 48.0 2.89e-01 100.0% 13.4%
4977997 2003.1.1.39 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_NADP 0.58 44.0 2.63e-01 100.0% 9.5%
4947928 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.57 44.0 2.96e-01 92.9% 20.0%
4551070 5050.1.1.2 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.57 43.0 2.80e-01 100.0% 15.6%
3785433 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 47.0 2.98e-01 100.0% 19.1%
3440194 601.3.1.4 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PTPLA 0.55 48.0 3.03e-01 100.0% 20.0%
3596194 109.50.1.0 alpha superhelices › Repetitive alpha hairpins › Pre-mRNA-splicing factor 38A › Pre-mRNA-splicing factor 38A 0.55 45.0 2.95e-01 100.0% 21.9%
None 0.54 42.0 2.55e-01 85.7% 60.0%
3719389 109.4.1.370 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Symplekin_C 0.54 41.0 2.61e-01 83.3% 16.4%
3349750 3567.1.1.75 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer › PTPLA 0.54 47.0 2.99e-01 100.0% 20.5%
3201554 150.1.1.98 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Vwaint 0.54 40.0 2.95e-01 83.3% 63.3%
4030496 5081.1.1.2 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 0.54 44.0 2.95e-01 100.0% 22.1%
3277618 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 41.0 3.36e-01 83.3% 80.0%
3743981 5081.1.1.2 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 0.53 43.0 2.92e-01 100.0% 22.6%
3219996 576.1.1.1 few secondary structure elements › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin extracellular domain › Tetraspanin 0.52 44.0 3.26e-01 97.6% 92.2%
3506798 7015.1.1.7 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › PTPLA 0.52 44.0 2.96e-01 100.0% 25.7%
4026556 2002.1.1.192 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase 0.52 44.0 2.45e-01 100.0% 77.7%
3672887 109.2.1.0 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid 0.51 43.0 2.47e-01 100.0% 8.7%
4567738 192.29.1.50 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › PTPLA 0.51 43.0 2.79e-01 100.0% 21.0%
5000766 3003.1.1.1 a+b complex topology › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › N-terminal subdomain in DNA replication initiator (cdc21/cdc54) › MCM_N 0.51 43.0 3.30e-01 100.0% 52.4%