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OR553905.1__WNN95195.1__SEA_MAGRITTE_244__00218

Bact-Vir

OR553905.1__WNN95195.1__SEA_MAGRITTE_244__00218

Identity

Accession:
OR553905 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-29_128-285
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12705.14 best PDDEXK_1 41.1 3.00e-10 86.9% 53.0%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h4rA00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.78 62.0 5.71e-01 82.3% 91.3%
8d3mI01 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.68 63.0 5.95e-01 100.0% 92.3%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.64 60.0 5.64e-01 100.0% 85.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3950933 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.82 73.0 6.20e-01 92.0% 92.1%
5032910 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.80 54.0 6.44e-01 86.3% 100.0%
5021430 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.78 67.0 6.45e-01 89.7% 93.3%
4969306 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 67.0 5.71e-01 90.3% 85.7%
3945875 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.77 53.0 5.95e-01 74.9% 87.9%
5005260 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.76 64.0 5.53e-01 87.4% 86.2%
4247735 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.76 62.0 3.96e-01 85.7% 30.4%
4950793 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.76 64.0 4.14e-01 88.6% 40.4%
4943727 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.76 65.0 5.35e-01 90.3% 85.0%
4938605 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.76 63.0 5.68e-01 87.4% 96.2%
4392521 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 65.0 5.40e-01 90.3% 94.4%
5005960 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.75 64.0 6.36e-01 89.7% 93.5%
4932093 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.75 64.0 5.54e-01 90.3% 94.2%
4932843 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.74 65.0 5.77e-01 92.6% 92.2%
5076203 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.74 64.0 6.16e-01 90.3% 90.8%
4947545 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.73 63.0 6.12e-01 90.3% 94.2%
5042023 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.73 63.0 6.12e-01 90.3% 93.7%
3837602 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 68.0 5.59e-01 100.0% 82.6%
3959510 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.73 68.0 4.91e-01 100.0% 51.3%
3954713 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.72 67.0 5.83e-01 98.3% 92.9%
4982078 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.72 62.0 5.15e-01 90.3% 95.2%
3290816 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.72 66.0 3.99e-01 98.3% 22.2%
5080245 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.72 61.0 5.96e-01 89.7% 96.3%
4964811 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.72 54.0 4.68e-01 77.7% 87.3%
4968936 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.71 61.0 5.69e-01 90.3% 93.0%
3414564 2008.1.1.29 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Dna2 0.71 67.0 5.63e-01 100.0% 96.8%
4966546 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.71 66.0 5.66e-01 99.4% 95.5%
4163068 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.70 67.0 4.01e-01 100.0% 27.6%
4927000 2008.1.1.217 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase 0.70 66.0 3.95e-01 99.4% 21.2%
3288745 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.70 50.0 4.72e-01 72.6% 99.5%
5045797 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.69 65.0 6.33e-01 99.4% 92.6%
4346470 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.69 49.0 4.09e-01 71.4% 82.5%
5003779 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 64.0 5.49e-01 99.4% 93.6%
5041156 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.68 53.0 5.44e-01 79.4% 98.2%
4555637 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.68 63.0 6.23e-01 98.3% 97.2%
4929251 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.68 63.0 6.17e-01 99.4% 93.7%
3253903 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.67 49.0 4.52e-01 74.3% 96.4%
4933945 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.67 62.0 5.81e-01 100.0% 84.2%
5066595 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.66 62.0 5.97e-01 99.4% 93.8%
4953680 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.66 61.0 5.30e-01 99.4% 96.5%
3555330 2008.1.1.97 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Exo5 0.65 61.0 5.13e-01 100.0% 93.7%
4928680 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 56.0 5.46e-01 90.3% 83.2%
5009927 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.65 56.0 5.74e-01 97.1% 95.3%
4930402 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.64 49.0 4.94e-01 78.3% 89.7%
5079183 2008.1.1.4 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.62 51.0 4.72e-01 86.9% 95.9%
5080739 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.62 47.0 4.21e-01 78.3% 88.1%
4014350 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 47.0 3.77e-01 81.7% 63.2%
4990214 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 46.0 4.51e-01 79.4% 96.3%
4043610 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 55.0 4.88e-01 100.0% 95.6%
3821558 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.57 48.0 3.86e-01 89.1% 62.8%
3691245 2008.1.1.27 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAI1 0.56 47.0 4.17e-01 89.1% 93.3%
5079877 2008.1.1.5 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NucS_C 0.52 32.0 3.69e-01 90.3% 83.2%
D2 medium residues 30-127
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 46.0 4.73e-01 90.8% 77.7%
1navA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.59 47.0 3.55e-01 87.8% 84.2%
3cexA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.54 38.0 3.19e-01 73.5% 74.7%
2b1eA03 1.10.357.60 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.52 46.0 3.92e-01 100.0% 69.0%
3eayA01 1.10.418.20 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › 0.52 39.0 3.63e-01 79.6% 95.2%
6wlvB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 38.0 2.92e-01 82.7% 64.7%
4hd1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.50 43.0 3.22e-01 96.9% 67.7%
3terA00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 33.0 3.11e-01 75.5% 55.5%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 29.0 3.46e-01 87.8% 83.8%
2zxeA02 1.20.1110.10 Mainly Alpha › Up-down Bundle › Calcium-transporting ATPase, transmembrane domain › Calcium-transporting ATPase, transmembrane domain 0.50 43.0 2.93e-01 100.0% 90.9%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.50 34.0 3.72e-01 71.4% 97.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3743165 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.64 42.0 3.85e-01 91.8% 52.0%
3253944 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.62 43.0 3.49e-01 95.9% 39.4%
3710097 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 52.0 4.63e-01 95.9% 66.4%
3724663 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.59 48.0 4.56e-01 87.8% 74.8%
3474500 632.7.1.25 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 0.59 32.0 3.45e-01 90.8% 60.0%
3598088 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 39.0 3.55e-01 89.8% 50.0%
3899864 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.74e-01 96.9% 84.8%
5083220 1075.1.2.0 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.58 49.0 3.17e-01 93.9% 46.3%
3798955 197.1.1.1 alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M 0.57 39.0 3.52e-01 95.9% 50.4%
3594890 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.57 51.0 3.21e-01 100.0% 35.6%
3593393 5073.1.1.0 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.57 51.0 3.37e-01 100.0% 46.7%
4312088 3226.1.1.5 alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › BenE 0.57 48.0 3.36e-01 100.0% 83.4%
3716059 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.57 50.0 3.17e-01 100.0% 34.5%
5048962 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.56 36.0 2.60e-01 83.7% 20.3%
3718509 2004.1.1.71 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT 0.55 45.0 3.14e-01 88.8% 66.7%
3237750 101.1.2.303 alpha arrays › HTH › HTH › winged helix domain › RPC5 0.54 34.0 3.55e-01 92.9% 67.8%
5062702 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.54 46.0 3.77e-01 94.9% 74.2%
3589338 5073.1.1.4 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C,Cation_ATPase_N 0.54 46.0 3.16e-01 95.9% 75.7%
5008284 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.54 44.0 3.18e-01 90.8% 59.0%
5076081 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.54 46.0 3.75e-01 95.9% 74.2%
1552160 4070.1.1.1 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 0.53 47.0 3.77e-01 100.0% 53.3%
4968577 1075.1.2.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.53 45.0 3.45e-01 95.9% 98.3%
3339353 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.53 39.0 4.03e-01 78.6% 93.3%
3696578 109.4.1.332 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Mtf2 0.53 47.0 3.35e-01 96.9% 34.8%
2872820 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.52 47.0 3.68e-01 100.0% 50.0%
3664025 101.1.4.59 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › RhoGAP 0.52 40.0 3.92e-01 81.6% 86.7%
3494116 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 44.0 3.53e-01 95.9% 67.3%