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OR553908.1__WNN95381.1__SEA_WATERMOORE_19__00019

Bact-Vir

OR553908.1__WNN95381.1__SEA_WATERMOORE_19__00019

Identity

Accession:
OR553908 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Samistivirus› Streptomyces_phage_Watermoore

TaxID: 3077800

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-46
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.80 60.0 4.03e-01 100.0% 22.0%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 53.0 3.82e-01 100.0% 27.5%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.68 44.0 3.75e-01 100.0% 43.9%
4f0qD01 2.30.280.20 Mainly Beta › Roll › PUA domain-like › 0.66 44.0 2.64e-01 81.1% 9.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 47.0 3.88e-01 100.0% 38.7%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.66 46.0 4.55e-01 100.0% 68.2%
3po3S02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.65 45.0 3.63e-01 100.0% 37.8%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.63 49.0 3.27e-01 100.0% 24.2%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 4.38e-01 100.0% 93.8%
2yfsA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 48.0 2.77e-01 100.0% 8.9%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 47.0 3.42e-01 100.0% 29.0%
7pikC01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 50.0 3.21e-01 100.0% 19.3%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.59 45.0 4.08e-01 100.0% 61.1%
5aykA07 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 48.0 3.47e-01 100.0% 62.6%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 42.0 3.14e-01 100.0% 25.4%
7xlqD01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 42.0 3.21e-01 100.0% 31.0%
3rrrG01 6.20.370.50 Special › Other non-globular › Rhinovirus 14, subunit 4 › 0.56 34.0 3.22e-01 91.9% 94.7%
1wfqA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 3.82e-01 100.0% 87.7%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 40.0 2.43e-01 100.0% 10.3%
1fi8C00 2.60.40.550 Mainly Beta › Sandwich › Immunoglobulin-like › Ecotin 0.55 41.0 3.43e-01 89.2% 46.2%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 45.0 2.83e-01 100.0% 42.5%
3topA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 38.0 2.70e-01 100.0% 21.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.54e-01 100.0% 50.7%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.54 38.0 3.90e-01 94.6% 55.6%
4clfA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 38.0 2.54e-01 78.4% 34.2%
1sezA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 39.0 2.63e-01 100.0% 17.8%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 45.0 3.15e-01 100.0% 55.6%
6aiiA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 2.40e-01 100.0% 35.2%
2kfpA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.53 39.0 2.96e-01 100.0% 44.0%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 36.0 2.57e-01 83.8% 36.0%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.52 37.0 3.53e-01 100.0% 62.5%
1jhnA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 2.64e-01 100.0% 45.7%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 2.69e-01 100.0% 23.9%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.51 37.0 2.60e-01 94.6% 35.5%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 39.0 3.19e-01 100.0% 59.6%
2uvaG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 38.0 2.66e-01 100.0% 22.8%
7dfqA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 35.0 2.77e-01 94.6% 42.7%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.50 36.0 3.47e-01 97.3% 64.3%
4fumA01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.50 38.0 3.31e-01 100.0% 77.0%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.50 36.0 2.52e-01 100.0% 66.0%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.50 37.0 3.38e-01 83.8% 62.3%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.50 36.0 2.82e-01 100.0% 30.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3411035 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 53.0 5.70e-01 100.0% 86.7%
4982529 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 55.0 5.11e-01 100.0% 60.0%
5041400 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 54.0 5.10e-01 100.0% 64.4%
3243957 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 63.0 4.15e-01 100.0% 24.4%
None — 0.73 59.0 3.59e-01 100.0% 25.7%
5032539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 60.0 5.16e-01 100.0% 63.1%
3939734 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.71 55.0 4.18e-01 100.0% 35.0%
5072764 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 5.01e-01 100.0% 68.0%
3861070 4292.2.1.2 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.69 57.0 4.18e-01 100.0% 33.6%
5029199 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 52.0 4.28e-01 100.0% 43.8%
3422764 4.1.1.313 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7912 0.66 53.0 5.00e-01 100.0% 84.0%
4945800 3781.1.1.2 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11 0.65 54.0 4.66e-01 100.0% 96.9%
3265815 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 48.0 3.25e-01 100.0% 21.4%
3326194 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.64 49.0 3.69e-01 100.0% 36.5%
4935307 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 48.0 4.04e-01 100.0% 45.0%
4927645 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 47.0 3.59e-01 100.0% 37.4%
3226810 219.1.1.111 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.62 48.0 2.90e-01 100.0% 11.8%
3174442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 2.98e-01 100.0% 12.7%
3432877 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.31e-01 100.0% 56.9%
5048387 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.61 44.0 4.01e-01 100.0% 53.3%
3628669 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 48.0 4.11e-01 100.0% 53.8%
4021390 223.3.1.0 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins 0.60 47.0 3.08e-01 100.0% 19.0%
5045148 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 47.0 3.90e-01 100.0% 91.3%
3561689 223.1.1.71 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 0.59 42.0 2.58e-01 100.0% 11.6%
3251651 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.59 48.0 2.68e-01 100.0% 7.5%
3739035 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 48.0 4.16e-01 100.0% 58.3%
3997815 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 41.0 2.39e-01 81.1% 29.1%
5058661 304.55.1.14 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.59 47.0 3.36e-01 100.0% 35.4%
3559186 922.1.1.7 ↗ few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.57 42.0 4.24e-01 100.0% 97.5%
3705061 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 47.0 3.21e-01 100.0% 26.5%
3615475 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 39.0 2.75e-01 75.7% 17.9%
3910914 4111.1.1.3 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › DUF1907 0.56 43.0 2.94e-01 100.0% 21.2%
3458138 375.1.1.131 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF702 0.56 42.0 3.78e-01 100.0% 83.1%
3931897 69.1.2.1 ↗ beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH 0.56 43.0 3.10e-01 91.9% 41.6%
4935901 2.1.1.382 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28814 0.56 44.0 3.50e-01 100.0% 85.4%
3693121 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.55 50.0 3.49e-01 100.0% 35.5%
3751411 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.55 40.0 3.30e-01 100.0% 38.9%
3789052 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.55 42.0 2.52e-01 100.0% 10.1%
3391411 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 43.0 4.22e-01 100.0% 82.5%
4950105 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.53 45.0 2.92e-01 100.0% 25.1%
3507295 304.166.1.9 ↗ a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.53 42.0 3.19e-01 94.6% 37.0%
5031616 4.26.1.0 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.53 38.0 3.65e-01 100.0% 65.5%
3576729 375.1.1.146 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CCCH_Mcm10 0.53 39.0 3.71e-01 100.0% 100.0%
3712524 375.1.1.77 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 0.53 37.0 3.40e-01 100.0% 43.6%
2556671 5.1.4.16 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.53 38.0 3.56e-01 100.0% 65.6%
5050076 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.53 38.0 2.61e-01 100.0% 57.5%
3553448 376.1.3.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › STL11_N 0.52 39.0 3.26e-01 100.0% 42.4%
5018717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 45.0 3.94e-01 100.0% 65.5%
3251381 295.1.1.4 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.52 40.0 3.58e-01 97.3% 63.1%
3701675 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 38.0 3.45e-01 100.0% 64.7%
4221476 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.51 43.0 2.70e-01 100.0% 19.0%
3986836 375.1.1.253 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 0.50 43.0 3.79e-01 97.3% 69.1%
3232995 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.50 36.0 3.53e-01 97.3% 90.0%