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OR553908.1__WNN95481.1__SEA_WATERMOORE_130__00119

Bact-Vir

OR553908.1__WNN95481.1__SEA_WATERMOORE_130__00119

Identity

Accession:
OR553908 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stanwilliamsviridae› Samistivirus› Streptomyces_phage_Watermoore

TaxID: 3077800

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-51
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2erfA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.70 48.0 3.14e-01 71.4% 36.4%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 46.0 4.26e-01 71.4% 92.4%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 51.0 4.17e-01 83.7% 65.9%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.63 46.0 3.84e-01 79.6% 85.6%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.63 44.0 3.54e-01 75.5% 72.6%
2qh0A00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.63 48.0 3.57e-01 83.7% 50.4%
2azeB00 6.10.250.540 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.63 39.0 3.10e-01 87.8% 30.7%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.62 52.0 4.04e-01 100.0% 62.1%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.62 42.0 2.94e-01 73.5% 30.5%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 52.0 3.84e-01 100.0% 81.6%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.60 48.0 4.13e-01 93.9% 84.1%
2mjlA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.60 50.0 3.27e-01 89.8% 44.7%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.60 46.0 4.21e-01 85.7% 100.0%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 48.0 3.07e-01 93.9% 81.4%
2v73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 41.0 2.84e-01 73.5% 37.2%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 48.0 3.77e-01 95.9% 56.1%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.21e-01 81.6% 52.9%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 48.0 3.58e-01 89.8% 91.6%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.58 50.0 3.74e-01 100.0% 74.8%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 42.0 4.01e-01 77.6% 89.5%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 3.74e-01 100.0% 80.8%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.58 45.0 3.55e-01 100.0% 85.9%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 48.0 3.12e-01 98.0% 26.6%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.57 41.0 2.97e-01 81.6% 31.7%
3bxwA03 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 41.0 3.99e-01 77.6% 90.9%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.56 42.0 2.89e-01 85.7% 64.9%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.56 45.0 3.76e-01 98.0% 76.5%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 45.0 2.78e-01 95.9% 87.5%
1u3oA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 38.0 3.58e-01 75.5% 98.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.64e-01 91.8% 63.9%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 41.0 2.58e-01 91.8% 34.2%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 43.0 2.82e-01 93.9% 80.8%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.66e-01 81.6% 77.4%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 41.0 3.21e-01 98.0% 77.0%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.52 44.0 3.61e-01 100.0% 75.5%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 40.0 2.77e-01 100.0% 38.7%
4qt4A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.51 40.0 2.76e-01 89.8% 38.6%
3j7yD01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 37.0 3.04e-01 83.7% 82.1%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 39.0 3.22e-01 100.0% 85.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024768 330.3.1.7 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › AP2 0.71 48.0 4.67e-01 71.4% 70.9%
4961195 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 57.0 4.43e-01 93.9% 46.1%
4838661 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.69 55.0 4.35e-01 91.8% 56.0%
3765735 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.69 59.0 4.05e-01 100.0% 46.7%
5052666 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.68 44.0 3.59e-01 73.5% 35.1%
4090709 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.66 48.0 3.68e-01 77.6% 79.8%
4027723 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.66 47.0 4.22e-01 77.6% 100.0%
4979756 241.1.1.6 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN 0.65 46.0 3.38e-01 75.5% 63.0%
4656410 1.1.9.32 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › TnpB_IS66 0.65 51.0 4.24e-01 87.8% 60.7%
3194361 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.65 45.0 2.64e-01 73.5% 60.8%
4044986 391.1.2.3 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.64 49.0 4.32e-01 85.7% 65.3%
4932331 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.63 52.0 4.12e-01 89.8% 57.9%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.63 52.0 3.80e-01 100.0% 66.5%
5075279 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 51.0 4.01e-01 95.9% 55.7%
4887360 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 40.0 3.76e-01 89.8% 51.7%
5009577 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.62 46.0 3.47e-01 81.6% 43.2%
3713627 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.61 46.0 2.84e-01 83.7% 86.3%
2095510 1172.2.1.0 ↗ beta barrels › UL131A-like 0.59 47.0 3.78e-01 93.9% 62.0%
141639 223.10.1.1 ↗ a+b three layers › Profilin-like › Stage II sporulation protein SA › Stage II sporulation protein SA › SpoIISA_toxin 0.59 48.0 3.53e-01 95.9% 44.1%
5063524 2008.1.1.4 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Cas_Cas4 0.58 50.0 3.51e-01 100.0% 62.2%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 3.52e-01 81.6% 56.7%
3598125 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 3.45e-01 71.4% 62.7%
3252808 1170.1.2.0 ↗ beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) 0.55 47.0 4.17e-01 95.9% 71.4%
3580489 391.1.2.9 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 0.54 37.0 3.88e-01 73.5% 80.0%
4265586 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.54 39.0 3.03e-01 81.6% 83.2%
None — 0.54 47.0 2.72e-01 95.9% 94.7%
2332800 4059.1.1.0 ↗ a+b complex topology › Serpins › Serpins › Serpins 0.53 42.0 2.59e-01 89.8% 68.0%
4315853 2011.2.1.3 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.53 42.0 2.86e-01 89.8% 44.6%
4118730 2011.2.1.3 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.53 43.0 2.82e-01 89.8% 44.0%
3743129 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 35.0 2.98e-01 73.5% 48.6%
3847592 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 37.0 2.21e-01 83.7% 16.5%