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OR553908.1__WNN95482.1__SEA_WATERMOORE_131__00120

Bact-Vir

OR553908.1__WNN95482.1__SEA_WATERMOORE_131__00120

Identity

Accession:
OR553908 ↗
Kingdom:
phage

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-47
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.81 65.0 5.00e-01 100.0% 40.7%
5hp6A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.78 61.0 3.56e-01 100.0% 10.7%
3bhcA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.69 53.0 3.87e-01 97.6% 30.1%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 57.0 4.23e-01 100.0% 41.4%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.66 51.0 4.17e-01 85.7% 51.9%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.65 46.0 3.31e-01 100.0% 24.3%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.64 54.0 3.80e-01 100.0% 29.9%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.64 53.0 5.01e-01 97.6% 77.4%
3qqnA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 40.0 2.91e-01 97.6% 23.3%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.62 45.0 3.64e-01 85.7% 66.3%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 47.0 3.63e-01 100.0% 34.2%
4q52A00 2.60.40.3910 Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein 0.61 53.0 3.53e-01 100.0% 52.0%
1twfB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.61 50.0 3.67e-01 97.6% 92.7%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.61 50.0 2.93e-01 100.0% 77.9%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 51.0 3.85e-01 100.0% 38.4%
5ywwA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 51.0 3.35e-01 100.0% 79.7%
4i4kA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 3.54e-01 100.0% 29.7%
1f8vC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.59 44.0 2.68e-01 85.7% 36.3%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.59 45.0 2.62e-01 88.1% 9.0%
7qi3A01 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.59 51.0 3.00e-01 100.0% 12.9%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.58 46.0 2.67e-01 100.0% 62.1%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.57 49.0 3.55e-01 100.0% 34.4%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.57 43.0 3.76e-01 90.5% 53.3%
4fmrA02 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.57 43.0 3.51e-01 97.6% 42.0%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 47.0 3.64e-01 100.0% 63.8%
3ooxA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.56 47.0 2.84e-01 100.0% 56.1%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 41.0 2.51e-01 100.0% 11.1%
5a62A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 44.0 2.73e-01 95.2% 23.9%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.55 40.0 3.96e-01 100.0% 75.0%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.73e-01 100.0% 48.9%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 45.0 3.75e-01 100.0% 50.6%
3wkyB03 2.60.40.1520 Mainly Beta › Sandwich › Immunoglobulin-like › Hemocyanin, C-terminal domain 0.55 44.0 2.81e-01 95.2% 44.1%
3hvnA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.55 41.0 4.05e-01 100.0% 79.2%
1lshA03 2.20.50.20 Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 0.54 44.0 3.45e-01 100.0% 40.8%
4e2xA01 6.20.50.110 Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain 0.53 42.0 3.98e-01 90.5% 77.4%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.53 40.0 3.50e-01 100.0% 53.0%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 36.0 2.88e-01 73.8% 34.3%
3jvaA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 47.0 3.38e-01 100.0% 39.5%
4pswA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 40.0 3.08e-01 100.0% 33.1%
5azsA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.52 42.0 3.44e-01 100.0% 48.2%
1yc9A02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 43.0 3.56e-01 100.0% 53.0%
1fhvA02 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 43.0 3.16e-01 100.0% 52.4%
4ekuA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 41.0 3.12e-01 97.6% 59.8%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 40.0 3.48e-01 100.0% 88.5%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.51 41.0 2.73e-01 95.2% 22.8%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3731361 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 66.0 4.14e-01 100.0% 80.9%
3258814 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 59.0 4.41e-01 100.0% 36.2%
3516949 221.3.1.0 a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains 0.73 61.0 6.25e-01 97.6% 97.5%
3361760 2003.1.3.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8, Pyr_redox_3 0.71 64.0 3.91e-01 100.0% 17.6%
3714806 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.70 60.0 3.60e-01 97.6% 14.6%
3276418 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.69 60.0 3.51e-01 100.0% 13.1%
3876327 5.5.1.0 beta duplicates or obligate multimers › beta-propeller-like 0.69 60.0 5.73e-01 100.0% 88.0%
3733936 11.8.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like 0.67 58.0 3.84e-01 100.0% 23.3%
3802920 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.67 59.0 4.16e-01 100.0% 97.7%
3646089 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.66 56.0 4.63e-01 100.0% 58.7%
3968190 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 4.37e-01 100.0% 46.3%
3623179 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 4.01e-01 100.0% 35.2%
5045947 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.65 57.0 3.90e-01 100.0% 29.7%
3879830 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.64 56.0 3.89e-01 100.0% 30.3%
5018703 815.1.1.0 a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 0.64 54.0 4.28e-01 97.6% 58.9%
3677000 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.64 55.0 3.78e-01 100.0% 36.7%
2659065 265.1.1.3 a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat 0.64 54.0 4.16e-01 100.0% 60.4%
4286660 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 53.0 3.68e-01 100.0% 26.5%
3913071 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.64 47.0 3.33e-01 81.0% 26.4%
3858437 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.64 50.0 3.40e-01 100.0% 24.1%
3517405 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 56.0 4.73e-01 100.0% 62.9%
3600840 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 53.0 4.13e-01 100.0% 42.0%
3777035 11.1.1.504 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Dynactin_p62 0.63 47.0 4.07e-01 83.3% 85.5%
3587268 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 53.0 3.93e-01 100.0% 92.5%
3852918 4290.1.1.8 alpha duplicates or obligate multimers › HP0242-like › HP0242-like › HP0242-like › Dynactin_p62 0.63 47.0 4.08e-01 83.3% 85.5%
3568883 243.3.1.27 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Dynactin_p62 0.62 47.0 3.57e-01 83.3% 57.7%
5052639 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.62 53.0 3.37e-01 100.0% 18.3%
3237539 11.1.1.673 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CUT_N 0.62 53.0 3.94e-01 100.0% 40.9%
4962024 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.62 51.0 3.44e-01 100.0% 22.7%
3969465 6043.1.1.0 a+b two layers › yfeY-like › yfeY-like › yfeY-like 0.61 52.0 4.33e-01 100.0% 52.5%
3340060 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.61 52.0 4.36e-01 100.0% 58.7%
3607231 7504.1.1.3 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.60 51.0 3.21e-01 100.0% 64.8%
3426315 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 52.0 4.09e-01 100.0% 64.4%
3181856 264.1.1.9 beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.60 51.0 3.23e-01 97.6% 96.4%
3702518 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 51.0 3.83e-01 100.0% 43.6%
3902130 375.1.1.107 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Dynactin_p62 0.60 45.0 3.87e-01 83.3% 87.0%
4315684 283.2.1.12 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › DUF5452 0.60 49.0 4.01e-01 100.0% 46.7%
4044404 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.60 50.0 3.84e-01 100.0% 44.8%
4145438 3747.1.1.3 a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C 0.59 48.0 3.75e-01 95.2% 48.0%
4485729 1.1.5.44 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › SecDF_P1_head 0.59 44.0 3.30e-01 100.0% 78.7%
4022277 328.1.1.3 a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 0.59 46.0 3.47e-01 90.5% 45.1%
3684690 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.59 44.0 3.57e-01 85.7% 54.4%
3908664 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.54e-01 95.2% 94.4%
609 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.58 51.0 3.66e-01 100.0% 34.4%
3383213 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.58 49.0 2.95e-01 100.0% 13.8%
3273636 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.58 43.0 3.76e-01 81.0% 75.4%
3471125 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 47.0 4.61e-01 90.5% 91.1%
3360403 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.57 47.0 4.53e-01 100.0% 84.0%
3322969 213.1.1.86 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › PF31063 0.57 45.0 3.13e-01 100.0% 55.4%
3280088 223.1.1.17 a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs 0.57 43.0 3.37e-01 88.1% 38.0%
4014216 4121.1.1.0 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.56 47.0 2.80e-01 100.0% 16.7%
3958336 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 44.0 2.76e-01 100.0% 14.3%
3703852 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 46.0 3.20e-01 100.0% 63.0%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.56 46.0 3.26e-01 100.0% 29.6%
3880605 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 49.0 3.83e-01 100.0% 52.2%
5019455 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.56 47.0 3.09e-01 100.0% 31.8%
3377568 3459.1.1.3 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.56 46.0 3.72e-01 95.2% 49.4%
3227523 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 48.0 3.43e-01 100.0% 62.3%
3974914 7089.1.1.4 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › FlgI 0.55 45.0 3.43e-01 97.6% 37.4%
3181439 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 45.0 3.50e-01 100.0% 63.0%
4230774 101.1.9.117 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.55 41.0 3.24e-01 83.3% 42.1%
3737773 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 46.0 3.18e-01 100.0% 26.1%
3601595 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 40.0 2.77e-01 100.0% 30.2%
4882343 2003.1.1.59 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.54 43.0 2.59e-01 92.9% 12.4%
3696797 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.53 43.0 2.56e-01 100.0% 13.2%
3490701 5.1.5.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › CNH 0.53 45.0 2.69e-01 97.6% 13.1%
3242339 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 2.66e-01 97.6% 20.8%
3274927 2003.1.5.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.52 40.0 2.44e-01 100.0% 54.7%
4930176 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 37.0 2.36e-01 85.7% 69.9%
None 0.50 40.0 2.44e-01 100.0% 79.9%
4958519 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 44.0 2.98e-01 100.0% 51.6%