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OR567511.1__WOF01142.1__vBEnt31_000013__00013

Bact-Vir

OR567511.1__WOF01142.1__vBEnt31_000013__00013

Identity

Accession:
OR567511 ↗
Kingdom:
phage

Quality

79.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Karamvirus› Enterobacter_phage_vB_Ent31

TaxID: 3079656

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-81
PDB
Domain cluster: rep: MK327936.1__QBO63480.1__G2540_00246__00238__D5-65
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 47.0 5.21e-01 97.3% 100.0%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 39.0 4.73e-01 95.9% 93.6%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.64 34.0 4.12e-01 100.0% 90.0%
4fk1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 53.0 4.60e-01 93.2% 97.3%
3nlcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 3.63e-01 95.9% 68.7%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.34e-01 100.0% 87.5%
2culA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 50.0 3.58e-01 93.2% 86.7%
4ntdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 4.37e-01 93.2% 97.3%
4iimA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.64e-01 100.0% 96.5%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 49.0 4.01e-01 95.9% 83.2%
5nmxB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 48.0 4.46e-01 93.2% 98.9%
3wmvB00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 48.0 3.87e-01 100.0% 93.3%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 42.0 3.73e-01 86.3% 89.8%
4akgA03 3.20.180.20 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 0.51 34.0 3.31e-01 94.5% 60.2%
2gk3A00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.50 41.0 2.96e-01 95.9% 45.1%
3vkgA03 3.20.180.20 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 0.50 35.0 3.25e-01 94.5% 55.0%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3279467 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 52.0 4.51e-01 95.9% 96.5%
4995743 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 43.0 3.73e-01 87.7% 91.7%
3178002 2006.1.1.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Acid_PPase 0.55 38.0 2.98e-01 74.0% 53.9%
3556710 9.1.1.24 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.52 43.0 3.75e-01 100.0% 94.5%
6883 223.5.1.1 ↗ a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like › YNR034W-A-like 0.51 36.0 3.37e-01 91.8% 57.1%
D2 high residues 90-164
PDB
Domain cluster: rep: MW239124.1__QQG32192.1__CkP1_0225__00225__D6-80
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 48.0 4.94e-01 100.0% 73.2%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.58e-01 100.0% 66.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 4.69e-01 97.3% 97.9%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 39.0 3.77e-01 100.0% 56.5%
5ygqA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 4.38e-01 96.0% 98.4%
1h6vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 52.0 3.66e-01 96.0% 67.2%
4k7zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 52.0 3.69e-01 96.0% 66.5%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.24e-01 100.0% 74.0%
4emhA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 4.55e-01 100.0% 93.3%
7c9rH01 3.90.50.10 Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 0.59 42.0 3.39e-01 98.7% 37.8%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.20e-01 100.0% 77.5%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.59 50.0 3.11e-01 97.3% 34.6%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 37.0 4.22e-01 90.7% 87.3%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.58 51.0 4.22e-01 98.7% 87.6%
3ab1A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 49.0 4.21e-01 97.3% 97.6%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.35e-01 100.0% 80.3%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 37.0 3.53e-01 82.7% 55.7%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.55 34.0 3.63e-01 86.7% 73.0%
6vddD01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 38.0 2.99e-01 74.7% 51.6%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 32.0 1.90e-01 81.3% 7.9%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.54 43.0 3.34e-01 89.3% 72.1%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 38.0 3.98e-01 94.7% 89.2%
4dovA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.52 45.0 3.62e-01 100.0% 53.5%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.52 40.0 4.08e-01 84.0% 86.7%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.52 41.0 2.99e-01 90.7% 70.0%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 2.67e-01 89.3% 26.2%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.51 39.0 3.42e-01 82.7% 68.1%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 41.0 3.60e-01 93.3% 72.1%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.50 41.0 3.57e-01 98.7% 94.1%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5042986 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 50.0 5.41e-01 100.0% 90.0%
4613400 2003.1.2.16 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.65 54.0 3.40e-01 93.3% 49.0%
3839016 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 41.0 4.36e-01 100.0% 75.4%
4012140 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.64 54.0 3.20e-01 96.0% 44.8%
3970847 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 4.65e-01 74.7% 100.0%
3438573 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.63 53.0 3.22e-01 96.0% 43.1%
4186816 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.62 53.0 3.41e-01 96.0% 59.1%
3694649 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.62 51.0 3.32e-01 92.0% 88.9%
4380348 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.62 53.0 3.20e-01 97.3% 44.5%
3822963 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.61 42.0 3.47e-01 94.7% 41.5%
3729303 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.60 52.0 3.10e-01 97.3% 45.1%
4985100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 35.0 3.96e-01 100.0% 84.0%
4041343 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.59 38.0 4.25e-01 98.7% 100.0%
3499821 227.1.1.11 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.56 42.0 3.61e-01 82.7% 88.5%
3263649 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 3.89e-01 92.0% 82.3%
4948490 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 4.41e-01 88.0% 98.7%
4593266 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 41.0 4.10e-01 82.7% 80.0%
3589779 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.55 45.0 3.69e-01 93.3% 62.7%
4157389 4263.2.1.0 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.55 40.0 4.26e-01 78.7% 92.3%
4447649 71.1.1.8 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.54 43.0 3.12e-01 90.7% 70.2%
5053095 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.25e-01 72.0% 99.1%
2879361 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.52 40.0 3.31e-01 88.0% 68.2%
4633583 76.1.1.2 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.52 44.0 3.60e-01 100.0% 91.6%
3208578 76.1.1.7 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 0.52 42.0 3.67e-01 94.7% 94.4%
4014196 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 41.0 2.61e-01 92.0% 15.3%
4015194 76.1.1.0 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.51 37.0 3.30e-01 76.0% 70.0%
5069442 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.51 44.0 3.03e-01 100.0% 93.4%
3213269 206.1.2.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › IPK 0.51 38.0 2.69e-01 84.0% 85.9%
1116431 10.37.1.1 ↗ beta sandwiches › jelly-roll › TerD › TerD › TerD 0.51 43.0 3.33e-01 94.7% 81.4%
3595668 2003.1.2.7 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.51 42.0 3.01e-01 92.0% 44.9%
3265716 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 38.0 3.65e-01 84.0% 90.0%
3207878 76.1.1.7 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › DUF7600 0.50 39.0 3.22e-01 90.7% 66.3%
3480307 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.50 38.0 3.74e-01 84.0% 93.8%