Back to structures

OR574845.1__WQZ00128.1__CS5676_0060__00059

Bact-Vir

OR574845.1__WQZ00128.1__CS5676_0060__00059

Identity

Accession:
OR574845 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Taxonomy

TaxID: 3079663

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-53
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.90 78.0 6.65e-01 92.2% 68.8%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.90 78.0 4.49e-01 94.1% 23.3%
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.89 77.0 6.14e-01 92.2% 56.5%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.87 72.0 5.62e-01 90.2% 88.2%
3qf7A02 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.86 72.0 6.69e-01 90.2% 85.7%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.85 72.0 6.77e-01 92.2% 86.9%
2gtsA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.85 71.0 6.14e-01 92.2% 92.2%
1ykhA00 6.10.140.200 Special › Helix non-globular › Helix Hairpins › 0.84 72.0 5.76e-01 92.2% 55.8%
5c9eB01 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.84 65.0 5.32e-01 82.4% 49.4%
1s5jA04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.83 69.0 6.51e-01 92.2% 86.9%
6yz2A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.83 71.0 5.29e-01 94.1% 77.5%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.81 67.0 5.75e-01 92.2% 69.1%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.81 65.0 5.32e-01 88.2% 50.0%
5an3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.81 70.0 5.09e-01 94.1% 39.5%
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 70.0 4.95e-01 100.0% 72.4%
3eabE00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.78 66.0 5.47e-01 92.2% 79.1%
1dd5A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.78 66.0 5.09e-01 92.2% 79.8%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.78 65.0 5.53e-01 90.2% 60.0%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.78 69.0 5.17e-01 98.0% 91.7%
2ckoA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.78 67.0 4.16e-01 94.1% 42.9%
1u5eA01 6.10.250.220 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.77 62.0 6.21e-01 92.2% 96.2%
5b1oA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.76 61.0 5.68e-01 94.1% 70.8%
1xzzA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.76 64.0 4.15e-01 92.2% 24.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.75 61.0 5.62e-01 88.2% 80.0%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.75 62.0 4.22e-01 92.2% 35.0%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.75 62.0 5.26e-01 92.2% 65.9%
2l3lA01 1.20.58.1250 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain 0.75 61.0 4.83e-01 92.2% 56.6%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.75 56.0 5.63e-01 82.4% 98.0%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.74 60.0 4.01e-01 92.2% 78.1%
5mlc900 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.73 57.0 4.54e-01 88.2% 61.7%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 57.0 3.90e-01 92.2% 24.7%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.71 57.0 5.25e-01 88.2% 80.6%
4rg8A04 1.10.287.1240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 52.0 4.89e-01 78.4% 79.0%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.71 55.0 4.77e-01 94.1% 54.4%
3itfA00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 55.0 4.29e-01 86.3% 43.2%
3purA03 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 56.0 4.43e-01 92.2% 50.0%
4ehsA00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.69 57.0 4.36e-01 96.1% 75.8%
4mqbB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 60.0 3.92e-01 98.0% 85.7%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.66 57.0 4.63e-01 100.0% 51.6%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.66 53.0 3.86e-01 92.2% 32.6%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.64 56.0 4.70e-01 96.1% 94.0%
1e6cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 52.0 3.70e-01 94.1% 83.5%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 46.0 3.30e-01 90.2% 81.9%
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.55 42.0 3.87e-01 86.3% 69.0%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3434583 109.3.1.1 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank 0.94 77.0 4.55e-01 86.3% 27.5%
3386216 2008.1.1.101 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_4 0.90 71.0 4.50e-01 84.3% 37.7%
3576432 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.89 76.0 5.48e-01 92.2% 42.3%
3810882 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.88 75.0 4.60e-01 92.2% 55.6%
1878710 4970.1.1.1 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.88 74.0 7.14e-01 90.2% 91.1%
3267437 101.1.1.196 alpha arrays › HTH › HTH › Three-helical HTH › RWP-RK 0.88 80.0 6.47e-01 98.0% 56.7%
3650275 3602.1.1.0 alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain 0.88 75.0 6.47e-01 92.2% 65.3%
4324117 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.87 75.0 4.41e-01 92.2% 16.0%
3268765 4177.1.1.8 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 0.87 75.0 4.68e-01 92.2% 21.7%
4959390 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.87 72.0 6.45e-01 90.2% 72.9%
3408508 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.87 74.0 6.28e-01 92.2% 70.0%
3330792 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.87 73.0 6.70e-01 92.2% 75.4%
3817103 630.1.1.1 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind 0.86 73.0 4.95e-01 92.2% 28.8%
4569741 3712.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Med11 0.86 73.0 5.51e-01 92.2% 48.7%
4574972 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.86 75.0 7.05e-01 94.1% 100.0%
3631342 3559.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Med22 0.85 72.0 5.58e-01 92.2% 46.7%
3215718 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.85 71.0 6.02e-01 90.2% 61.3%
4534540 3718.1.1.1 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.85 72.0 5.64e-01 94.1% 49.5%
3738969 109.10.1.1 alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.85 71.0 4.57e-01 92.2% 42.7%
3577907 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.85 72.0 4.48e-01 92.2% 20.0%
4994869 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.85 72.0 5.41e-01 94.1% 49.2%
1124217 3791.1.1.1 alpha arrays › EDS1-PAD4 (EP) domain › EDS1-PAD4 (EP) domain › EDS1-PAD4 (EP) domain › EDS1_EP 0.84 73.0 4.56e-01 96.1% 20.9%
3577937 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.83 70.0 5.30e-01 92.2% 69.6%
3216584 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.83 76.0 6.08e-01 100.0% 68.4%
3262164 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.83 68.0 4.27e-01 92.2% 58.5%
4940281 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.82 74.0 6.84e-01 100.0% 92.3%
None 0.82 76.0 4.46e-01 100.0% 28.7%
3213281 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.82 69.0 4.27e-01 92.2% 19.6%
3998755 11.12.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb 0.82 67.0 4.04e-01 90.2% 16.1%
3790049 109.4.1.2762 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_2, TPR_8 0.81 64.0 3.93e-01 86.3% 15.3%
4320014 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.81 66.0 4.15e-01 92.2% 18.9%
3720652 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.81 68.0 4.24e-01 92.2% 20.8%
3268975 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.80 68.0 4.79e-01 94.1% 59.3%
4968943 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 66.0 5.54e-01 92.2% 61.2%
3503210 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.79 67.0 5.84e-01 92.2% 82.7%
3596712 633.1.1.0 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.79 65.0 4.64e-01 92.2% 35.3%
5081048 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.77 64.0 4.22e-01 94.1% 22.8%
4014485 5044.1.1.0 extended segments › PsbZ-like › PsbZ-like › PsbZ-like 0.77 64.0 5.25e-01 94.1% 57.9%
3403227 192.8.1.465 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › CHD5 0.76 61.0 4.82e-01 92.2% 44.5%
3707613 3877.1.1.0 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.76 67.0 4.23e-01 100.0% 38.8%
3577145 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.76 53.0 5.21e-01 74.5% 76.4%
3755827 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.75 65.0 3.99e-01 100.0% 24.8%
3600361 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.74 61.0 5.00e-01 92.2% 58.9%
3808540 376.1.6.9 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › PF26200 0.73 65.0 4.57e-01 98.0% 42.0%
4445312 3812.1.1.0 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE 0.73 56.0 5.73e-01 90.2% 90.0%
4017247 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.72 58.0 3.98e-01 92.2% 46.8%
4168463 605.1.1.108 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.72 56.0 4.63e-01 94.1% 46.0%
3833154 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.70 59.0 4.88e-01 94.1% 75.6%
3584915 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.69 55.0 4.70e-01 92.2% 52.9%
3762595 604.7.1.13 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › HR1 0.69 58.0 4.88e-01 96.1% 81.1%
3739322 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.69 60.0 4.05e-01 100.0% 82.5%
3386706 221.8.1.0 a+b two layers › beta-Grasp › GfcC › GfcC 0.67 55.0 4.19e-01 96.1% 39.2%
5043620 3352.1.1.1 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 0.66 53.0 3.11e-01 94.1% 19.4%
3362460 304.60.1.6 a+b two layers › Alpha-beta plaits › Ribosomal protein L10-like › Ribosomal protein L10-like › KIP1 0.62 54.0 4.65e-01 92.2% 94.7%