Back to structures

OR574845.1__WQZ00133.1__CS5676_0065__00064

Bact-Vir

OR574845.1__WQZ00133.1__CS5676_0065__00064

Identity

Accession:
OR574845 ↗
Kingdom:
phage

Quality

94.5 mean pLDDT

Taxonomy

TaxID: 3079663

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u04A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.70 61.0 4.50e-01 95.6% 73.3%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.68 39.0 3.40e-01 85.3% 37.6%
1lmeA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.67 58.0 4.45e-01 95.6% 76.0%
1lm4A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.66 58.0 4.20e-01 97.1% 73.7%
3e3uA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.66 57.0 4.13e-01 97.1% 69.4%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.66 57.0 4.54e-01 95.6% 84.7%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.08e-01 100.0% 91.4%
3qu1A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.66 56.0 4.22e-01 95.6% 70.8%
1rl4B00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.65 56.0 4.32e-01 97.1% 73.1%
3g5kA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.64 55.0 4.08e-01 97.1% 77.0%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.63 54.0 4.06e-01 97.1% 76.0%
4gqaB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.62 50.0 3.43e-01 88.2% 75.9%
2dt4A00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.62 55.0 4.33e-01 100.0% 51.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 38.0 4.30e-01 83.8% 85.7%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 44.0 3.23e-01 76.5% 63.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 5.17e-01 100.0% 98.4%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.61 49.0 3.59e-01 91.2% 97.5%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 40.0 4.06e-01 83.8% 70.1%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.60 44.0 3.35e-01 100.0% 31.6%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.92e-01 100.0% 95.5%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.59 39.0 4.44e-01 70.6% 94.0%
3dorA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.59 47.0 4.07e-01 88.2% 87.9%
1jnrB02 6.20.260.10 Special › Other non-globular › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Adenylylsulphate reductase, beta subunit, C-terminal domain 0.55 29.0 2.74e-01 70.6% 37.3%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.74e-01 89.7% 38.7%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.28e-01 82.4% 67.8%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 47.0 3.92e-01 100.0% 96.8%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.54 46.0 3.74e-01 100.0% 70.1%
2xg5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.65e-01 80.9% 92.4%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.53 42.0 3.26e-01 91.2% 55.7%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 43.0 3.41e-01 91.2% 54.1%
4a27A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.53 44.0 3.42e-01 94.1% 61.4%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 42.0 4.16e-01 88.2% 83.1%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.52 40.0 3.22e-01 82.4% 92.6%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 44.0 3.56e-01 91.2% 63.2%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.52 43.0 3.52e-01 95.6% 62.8%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.64e-01 79.4% 94.0%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.77e-01 83.8% 74.7%
6jhpA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.52 38.0 2.51e-01 79.4% 67.7%
1h6qA00 2.170.150.10 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 0.51 43.0 3.28e-01 95.6% 99.4%
2pndA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.18e-01 79.4% 94.1%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.12e-01 89.7% 50.0%
1n02A00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 42.0 3.69e-01 91.2% 75.5%
4kujA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 43.0 3.43e-01 100.0% 78.7%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 41.0 3.63e-01 97.1% 91.2%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 44.0 3.66e-01 100.0% 97.6%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 41.0 2.86e-01 89.7% 30.0%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4039287 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.69 60.0 4.45e-01 95.6% 70.0%
4256308 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.69 60.0 4.53e-01 95.6% 74.4%
4096233 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.69 60.0 4.41e-01 95.6% 71.3%
3987299 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.68 60.0 4.79e-01 97.1% 85.9%
3427612 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.68 59.0 4.29e-01 95.6% 65.9%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 50.0 5.38e-01 95.6% 96.4%
4086694 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.68 60.0 4.62e-01 97.1% 80.0%
981342 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.68 60.0 4.34e-01 97.1% 68.1%
4454013 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.68 59.0 4.29e-01 95.6% 76.7%
2121396 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.68 59.0 4.64e-01 95.6% 84.7%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.27e-01 100.0% 94.8%
4224338 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.67 59.0 4.28e-01 98.5% 72.1%
170021 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.66 57.0 4.13e-01 97.1% 69.4%
4420329 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.66 58.0 4.23e-01 97.1% 70.3%
4220709 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.66 57.0 4.26e-01 95.6% 72.4%
3989574 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.40e-01 98.5% 61.2%
4470382 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.65 57.0 4.19e-01 97.1% 73.9%
3966296 289.1.1.0 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase 0.65 56.0 4.19e-01 95.6% 72.7%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 5.09e-01 97.1% 85.7%
3969569 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 41.0 4.39e-01 86.8% 78.3%
4966092 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 42.0 3.48e-01 88.2% 39.5%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 48.0 4.74e-01 100.0% 84.0%
4229837 4.1.1.354 beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.59 51.0 3.80e-01 100.0% 42.7%
419 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 40.0 3.86e-01 83.8% 61.8%
3210707 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 47.0 4.97e-01 95.6% 100.0%
6235 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 42.0 3.07e-01 76.5% 62.4%
157526 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 49.0 5.14e-01 95.6% 98.4%
4218488 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.59 48.0 4.62e-01 100.0% 78.8%
3945110 11.1.1.42 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PapD_C 0.58 42.0 3.86e-01 76.5% 91.1%
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.58 48.0 4.73e-01 100.0% 85.3%
4443040 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 44.0 3.81e-01 88.2% 52.9%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 48.0 4.41e-01 100.0% 71.1%
3443163 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.57 39.0 3.46e-01 88.2% 46.7%
3342201 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.57 43.0 3.71e-01 83.8% 52.2%
3482646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 49.0 3.52e-01 100.0% 33.0%
3679362 4.1.1.351 beta barrels › SH3 › SH3 › SH3 › SH3_ISE2 0.57 49.0 4.55e-01 95.6% 100.0%
3411042 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 46.0 4.79e-01 91.2% 100.0%
3737837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 47.0 4.77e-01 100.0% 96.9%
1778160 109.1.1.6 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.57 48.0 3.29e-01 100.0% 26.7%
3583296 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 49.0 4.88e-01 98.5% 95.7%
3480200 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 49.0 4.82e-01 98.5% 100.0%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 48.0 4.55e-01 100.0% 89.4%
5049738 2.1.1.94 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.56 43.0 4.11e-01 83.8% 71.2%
3482359 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 49.0 4.21e-01 100.0% 80.0%
3957296 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.56 45.0 3.55e-01 91.2% 83.3%
4378664 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 40.0 2.81e-01 80.9% 56.9%
5044389 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.55 38.0 4.29e-01 83.8% 100.0%
4026147 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 46.0 3.44e-01 94.1% 71.7%
3991896 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 47.0 4.27e-01 100.0% 73.7%
3984464 274.1.1.12 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSJ 0.55 45.0 3.39e-01 91.2% 67.3%
3969959 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 47.0 4.38e-01 100.0% 80.0%
3590404 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.61e-01 83.8% 97.1%
3658595 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.54 40.0 4.02e-01 85.3% 78.6%
3642370 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.53 40.0 3.38e-01 83.8% 46.7%
3275111 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.53 45.0 2.84e-01 94.1% 92.1%
3570527 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 41.0 3.36e-01 88.2% 73.1%
3249483 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.43e-01 79.4% 93.3%
3636503 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.50 42.0 4.24e-01 98.5% 92.9%
3705696 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.50 39.0 2.75e-01 86.8% 80.0%