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OR575930.1__WOZ57415.1__X__00004

Bact-Vir

OR575930.1__WOZ57415.1__X__00004

Identity

Accession:
OR575930 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-66
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6d92A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 57.0 3.88e-01 100.0% 32.4%
2h3gX01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 54.0 4.91e-01 100.0% 68.2%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.64 53.0 4.78e-01 100.0% 67.0%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.64 50.0 4.07e-01 87.5% 89.8%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 52.0 4.23e-01 92.2% 80.8%
3ktnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.63 49.0 3.11e-01 92.2% 16.2%
2gl5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.61 54.0 4.28e-01 100.0% 97.0%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.61 45.0 4.39e-01 95.3% 73.2%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 49.0 4.21e-01 92.2% 89.6%
1a9xA06 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 47.0 3.36e-01 87.5% 75.4%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 51.0 3.76e-01 100.0% 48.9%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 47.0 3.04e-01 90.6% 22.1%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.59 48.0 3.81e-01 92.2% 74.3%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.59 50.0 3.49e-01 100.0% 75.0%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 40.0 3.20e-01 75.0% 54.7%
1uc8A03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.57 38.0 3.42e-01 70.3% 80.9%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 45.0 3.68e-01 87.5% 88.6%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 47.0 4.05e-01 92.2% 58.4%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 49.0 3.51e-01 100.0% 35.5%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 48.0 4.27e-01 98.4% 99.0%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 43.0 3.80e-01 92.2% 89.6%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.41e-01 87.5% 45.6%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 45.0 3.45e-01 95.3% 38.5%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 45.0 3.93e-01 98.4% 85.2%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.54 39.0 3.30e-01 76.6% 69.4%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.36e-01 100.0% 43.8%
2o8bB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.53 41.0 3.04e-01 100.0% 30.1%
6nhsA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 40.0 2.85e-01 89.1% 82.4%
3qt2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.72e-01 100.0% 93.8%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.52 42.0 2.47e-01 89.1% 11.1%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.51 44.0 2.93e-01 100.0% 87.8%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 41.0 3.23e-01 93.8% 98.6%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 39.0 3.35e-01 90.6% 81.4%
5eoxB03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 42.0 3.48e-01 100.0% 76.6%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248029 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.69 56.0 4.32e-01 93.8% 39.3%
4481004 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 52.0 3.80e-01 100.0% 31.9%
4940463 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.67 57.0 4.50e-01 95.3% 52.6%
4240724 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.67 45.0 4.07e-01 79.7% 51.8%
None 0.67 59.0 3.60e-01 100.0% 17.1%
4989642 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.67 60.0 3.77e-01 100.0% 24.0%
3697317 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 49.0 4.43e-01 92.2% 56.7%
3453242 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.66 58.0 3.44e-01 100.0% 13.6%
4039156 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.65 54.0 4.51e-01 100.0% 52.7%
4950045 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.64 56.0 5.13e-01 96.9% 81.2%
139759 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.64 52.0 4.37e-01 96.9% 52.2%
3983036 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.63 52.0 5.25e-01 100.0% 92.3%
3897049 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 54.0 4.15e-01 100.0% 58.7%
4522761 3308.1.1.0 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme 0.63 51.0 4.34e-01 90.6% 72.7%
3983782 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.63 52.0 4.62e-01 100.0% 63.8%
4945290 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 48.0 4.93e-01 92.2% 90.0%
3612373 109.4.1.438 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CHAT 0.63 54.0 3.79e-01 100.0% 60.0%
5079440 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 53.0 3.87e-01 100.0% 33.3%
4505972 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.63 43.0 2.75e-01 71.9% 16.9%
4221376 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.62 55.0 4.41e-01 100.0% 49.2%
4259150 295.1.1.46 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.62 53.0 4.28e-01 100.0% 85.9%
3203226 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.62 53.0 3.77e-01 100.0% 42.3%
4293728 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.62 51.0 4.18e-01 100.0% 48.0%
4564292 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.62 53.0 4.43e-01 100.0% 54.8%
4927878 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.61 52.0 4.37e-01 98.4% 55.5%
3986557 2484.1.1.199 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.61 52.0 4.40e-01 100.0% 84.3%
3772335 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.60 49.0 3.85e-01 89.1% 43.0%
4931409 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.72e-01 100.0% 41.5%
3514681 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.60 41.0 4.24e-01 79.7% 78.3%
3468117 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 52.0 3.81e-01 100.0% 44.4%
3740970 5.1.4.249 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.59 47.0 2.98e-01 87.5% 22.6%
4990321 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.59 50.0 3.38e-01 93.8% 81.7%
3936788 2484.1.1.17 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_1 0.59 52.0 3.67e-01 100.0% 36.8%
3439529 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 50.0 3.81e-01 100.0% 48.5%
5049605 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 43.0 4.47e-01 92.2% 94.5%
4932428 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.59 49.0 4.86e-01 100.0% 91.4%
None 0.59 49.0 3.48e-01 100.0% 28.1%
3958652 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 49.0 3.67e-01 100.0% 35.7%
3272081 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 48.0 3.55e-01 92.2% 35.3%
3718117 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.58 49.0 3.30e-01 100.0% 29.1%
3957539 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 48.0 4.03e-01 100.0% 72.8%
4938125 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.58 50.0 4.54e-01 95.3% 74.1%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.58 43.0 4.58e-01 90.6% 98.2%
3958247 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 47.0 3.37e-01 100.0% 38.5%
3328840 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.57 49.0 4.55e-01 100.0% 75.3%
3926114 223.2.1.6 a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN 0.57 45.0 3.16e-01 90.6% 26.8%
3959120 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 47.0 4.44e-01 100.0% 76.5%
3958443 2484.1.1.108 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_assoc 0.57 47.0 3.52e-01 100.0% 46.2%
3959174 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.57 47.0 3.85e-01 100.0% 48.1%
3390600 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.57 45.0 4.30e-01 92.2% 74.7%
3877924 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 42.0 3.84e-01 92.2% 60.0%
4116893 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.56 45.0 3.39e-01 92.2% 48.2%
4944869 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 41.0 3.31e-01 90.6% 39.2%
4928393 5.1.3.22 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.55 43.0 2.87e-01 85.9% 29.7%
3968468 4152.2.1.0 a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.55 45.0 4.34e-01 93.8% 90.7%
3516863 330.1.1.10 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.54 40.0 3.49e-01 92.2% 51.6%
4436313 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 44.0 4.02e-01 93.8% 71.1%
3338071 2484.1.1.215 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27041 0.54 47.0 3.51e-01 100.0% 42.4%
3741555 4969.1.1.0 alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I 0.53 45.0 3.15e-01 98.4% 74.8%
3586665 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 37.0 3.93e-01 90.6% 83.6%
4944011 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.53 47.0 4.24e-01 100.0% 73.3%
3206632 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.53 44.0 4.10e-01 95.3% 72.9%
5000180 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.52 42.0 3.19e-01 90.6% 60.0%
3382312 192.18.1.0 alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like 0.52 45.0 3.01e-01 100.0% 25.4%
4081842 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.52 41.0 2.92e-01 90.6% 37.7%
3701914 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 41.0 3.71e-01 93.8% 75.8%
5081098 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.51 43.0 2.81e-01 98.4% 32.5%
3288021 2008.6.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains 0.51 40.0 2.98e-01 90.6% 46.7%
5069135 7504.1.1.2 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › NTPase_I-T 0.50 41.0 3.02e-01 92.2% 55.7%