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OR575930.1__WOZ57422.1__X__00011
Bact-VirOR575930.1__WOZ57422.1__X__00011
Identity
- Accession:
- OR575930 ↗
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vandenendeviridae›
Chemalvirus›
Pseudomonas_phage_vB_PseuGesM_254
TaxID: 3092638
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-70
Domain cluster:
rep: NC_070780.1__YP_010651107.1__PP428_gp270__00270__D2-75
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6s8zA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.78 | 49.0 | 5.05e-01 | 75.8% | 67.7% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 44.0 | 4.44e-01 | 77.3% | 61.5% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 46.0 | 4.55e-01 | 77.3% | 63.8% |
| 2derA02 | 2.30.30.280 | Mainly Beta › Roll › SH3 type barrels. › Adenine nucleotide alpha hydrolases-like domains | 0.68 | 56.0 | 5.58e-01 | 100.0% | 85.5% |
| 2j3vA02 | 3.90.176.10 | Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 | 0.68 | 55.0 | 3.83e-01 | 87.9% | 62.3% |
| 3upuA03 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 45.0 | 3.48e-01 | 71.2% | 52.7% |
| 2pw9A01 | 4.10.80.30 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › DNA polymerase; domain 6 | 0.61 | 26.0 | 3.39e-01 | 84.8% | 92.0% |
| 3pnrA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.59 | 48.0 | 3.42e-01 | 98.5% | 82.5% |
| 1c4pC00 | 3.10.20.180 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.58 | 48.0 | 4.04e-01 | 100.0% | 88.6% |
| 3n77A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 50.0 | 3.97e-01 | 100.0% | 68.1% |
| 4m01A02 | 3.10.20.320 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) | 0.56 | 49.0 | 4.71e-01 | 98.5% | 98.7% |
| 1se9A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 50.0 | 4.33e-01 | 100.0% | 84.2% |
| 1wiaA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 48.0 | 4.72e-01 | 100.0% | 98.6% |
| 2xf4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 42.0 | 2.91e-01 | 84.8% | 61.0% |
| 3fsdA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 3.74e-01 | 100.0% | 91.7% |
| 3lhoA01 | 3.10.180.50 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › | 0.52 | 40.0 | 2.88e-01 | 89.4% | 87.4% |
| 2shpB03 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 39.0 | 2.58e-01 | 84.8% | 19.1% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.52 | 43.0 | 3.67e-01 | 100.0% | 60.5% |
| 1x1mA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 44.0 | 3.81e-01 | 100.0% | 80.4% |
| 2al3A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 44.0 | 4.28e-01 | 100.0% | 93.4% |
| 5wcmA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 39.0 | 2.63e-01 | 84.8% | 49.8% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.50 | 41.0 | 3.46e-01 | 100.0% | 68.5% |
| 2p8jA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 40.0 | 2.99e-01 | 95.5% | 94.2% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.50 | 38.0 | 3.73e-01 | 100.0% | 76.4% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3961706 | 4.1.1.161 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4178 | 0.82 | 50.0 | 5.09e-01 | 72.7% | 63.1% |
| 3802388 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.81 | 71.0 | 6.59e-01 | 100.0% | 77.1% |
| 4031578 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.80 | 40.0 | 4.51e-01 | 100.0% | 64.0% |
| 3211944 | 206.1.1.71 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo | 0.79 | 43.0 | 2.64e-01 | 71.2% | 10.0% |
| 4997767 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 37.0 | 4.47e-01 | 71.2% | 66.7% |
| 3788875 | 4.6.1.5 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › tRNA_Me_trans_M | 0.67 | 55.0 | 5.33e-01 | 100.0% | 78.7% |
| 5041150 | 239.1.1.15 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › CPxCG_zf | 0.66 | 60.0 | 5.94e-01 | 100.0% | 95.7% |
| 5081486 | 3425.2.1.0 ↗ | a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH C-terminal domain › YycH C-terminal domain | 0.64 | 48.0 | 3.24e-01 | 81.8% | 28.0% |
| 3619212 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.63 | 49.0 | 3.17e-01 | 84.8% | 20.0% |
| 5052888 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 54.0 | 4.48e-01 | 100.0% | 67.2% |
| 3220105 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.62 | 49.0 | 3.12e-01 | 84.8% | 19.0% |
| 4249669 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 53.0 | 4.67e-01 | 98.5% | 98.9% |
| 4025091 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 54.0 | 5.16e-01 | 100.0% | 98.7% |
| 3485632 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 40.0 | 3.50e-01 | 72.7% | 90.0% |
| 5039081 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.58 | 48.0 | 3.76e-01 | 100.0% | 67.9% |
| 3502375 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.57 | 35.0 | 4.18e-01 | 97.0% | 93.3% |
| 3986836 | 375.1.1.253 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-IS66 | 0.56 | 37.0 | 3.98e-01 | 98.5% | 83.6% |
| 5077779 | 2003.1.5.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BpsA_C | 0.55 | 46.0 | 3.18e-01 | 98.5% | 74.2% |
| 3973898 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.55 | 48.0 | 3.77e-01 | 100.0% | 57.2% |
| 4419304 | 11.4.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › Antigen MPT63/MPB63 (immunoprotective extracellular protein) › DUF4352 | 0.55 | 43.0 | 3.12e-01 | 98.5% | 30.3% |
| 3981111 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.55 | 48.0 | 3.70e-01 | 100.0% | 50.3% |
| 3180908 | 221.4.1.24 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX, DUF4743 | 0.54 | 46.0 | 2.99e-01 | 100.0% | 31.6% |
| 3587188 | 2.1.1.33 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF961 | 0.53 | 36.0 | 3.17e-01 | 97.0% | 45.2% |
| 3436820 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.53 | 44.0 | 3.40e-01 | 98.5% | 61.8% |
| 5027751 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.53 | 44.0 | 3.53e-01 | 100.0% | 83.3% |
| 3939070 | 11.1.1.1173 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7757 | 0.53 | 44.0 | 3.72e-01 | 100.0% | 97.6% |
| 4888726 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.53 | 44.0 | 3.44e-01 | 100.0% | 68.9% |
| 3576004 | 859.1.1.3 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › ATG101 | 0.52 | 45.0 | 3.15e-01 | 100.0% | 66.4% |
| 3504078 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.51 | 43.0 | 2.97e-01 | 100.0% | 32.3% |
| 4091785 | 2.1.1.33 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF961 | 0.50 | 39.0 | 3.46e-01 | 87.9% | 62.9% |