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OR576727.1__WNM70167.1__X__00074

Bact-Vir

OR576727.1__WNM70167.1__X__00074

Identity

Accession:
OR576727 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myxococcus_phage_Mx1

TaxID: 2994995

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-83
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.69 43.0 3.88e-01 71.4% 47.5%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.06e-01 100.0% 81.2%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.65 53.0 5.13e-01 88.3% 91.8%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.63 55.0 5.28e-01 100.0% 82.2%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 5.03e-01 88.3% 89.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.60e-01 100.0% 78.7%
4jbjA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 49.0 4.40e-01 87.0% 72.7%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 54.0 4.32e-01 100.0% 66.9%
1uhzA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 45.0 4.28e-01 89.6% 67.4%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 53.0 4.18e-01 100.0% 68.6%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.59 42.0 3.40e-01 87.0% 39.6%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 44.0 2.75e-01 77.9% 95.7%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.59 39.0 4.20e-01 83.1% 82.5%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 52.0 4.01e-01 100.0% 95.5%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 44.0 3.69e-01 80.5% 90.8%
3f6gA01 3.30.160.740 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 4.51e-01 97.4% 98.3%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 49.0 4.26e-01 100.0% 62.7%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.03e-01 100.0% 69.1%
2uvaG08 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 46.0 3.16e-01 92.2% 87.7%
3oa4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 40.0 3.36e-01 92.2% 43.6%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.56 49.0 4.24e-01 100.0% 67.7%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 44.0 3.75e-01 87.0% 80.5%
1viuC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 38.0 2.91e-01 70.1% 69.0%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.56 48.0 4.33e-01 94.8% 81.3%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 38.0 3.22e-01 71.4% 72.2%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 50.0 4.03e-01 100.0% 69.2%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 41.0 4.34e-01 90.9% 91.2%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 48.0 3.92e-01 100.0% 69.8%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 49.0 3.92e-01 100.0% 64.7%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.54 44.0 3.99e-01 100.0% 65.4%
3d6xB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 37.0 3.12e-01 71.4% 75.7%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.53 46.0 4.72e-01 100.0% 100.0%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.52 39.0 4.27e-01 98.7% 93.8%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 39.0 4.09e-01 94.8% 88.7%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.53e-01 100.0% 63.6%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.51e-01 87.0% 83.7%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.60e-01 100.0% 61.3%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 3.90e-01 90.9% 73.4%
3rf9B02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 42.0 2.82e-01 89.6% 46.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3589606 4.1.1.109 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_13 0.83 61.0 6.39e-01 100.0% 84.3%
3934278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 4.38e-01 100.0% 50.4%
5054047 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 52.0 5.28e-01 96.1% 84.0%
2326859 330.21.1.0 ↗ a+b two layers › dsRBD-like 0.67 50.0 4.68e-01 79.2% 92.6%
3958145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.33e-01 100.0% 90.8%
3821287 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.66 50.0 4.10e-01 100.0% 44.3%
3167531 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.66 50.0 4.14e-01 100.0% 45.9%
3842361 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.65 56.0 5.22e-01 100.0% 75.8%
3971807 243.18.1.1 ↗ a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain › Mak_N_cap 0.64 54.0 4.24e-01 92.2% 88.7%
3245735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.12e-01 100.0% 52.2%
3731144 2003.1.3.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like, NAD_binding_8 0.63 47.0 2.81e-01 77.9% 70.6%
4932452 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 53.0 4.92e-01 90.9% 93.7%
3241736 9.1.1.48 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.63 56.0 4.17e-01 100.0% 56.9%
4008731 223.1.1.24 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 0.62 49.0 4.72e-01 87.0% 81.1%
3560835 2004.1.1.156 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.61 52.0 3.34e-01 92.2% 84.7%
5025884 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 47.0 4.94e-01 87.0% 91.4%
3540354 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 48.0 5.09e-01 84.4% 95.6%
4271291 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 47.0 4.96e-01 93.5% 91.4%
3840117 207.2.1.83 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › VacA2 0.60 46.0 2.62e-01 81.8% 10.4%
3515433 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 42.0 4.48e-01 90.9% 86.2%
5021439 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 42.0 4.24e-01 90.9% 78.7%
3595651 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.57 42.0 3.68e-01 100.0% 51.7%
3436093 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 41.0 4.23e-01 97.4% 81.3%
3867705 3338.2.1.1 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › Pep_M12B_propep 0.56 42.0 3.55e-01 79.2% 79.2%
3481273 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 41.0 3.78e-01 90.9% 58.1%
3619264 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.56 42.0 4.01e-01 94.8% 67.8%
5043413 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.55 46.0 4.08e-01 96.1% 63.6%
3395896 4059.1.1.1 ↗ a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.55 42.0 2.74e-01 84.4% 56.0%
3698588 4.27.1.0 ↗ beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 0.54 40.0 3.28e-01 100.0% 40.5%
3763572 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.53 48.0 3.81e-01 100.0% 61.3%
4234560 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.53 47.0 3.92e-01 100.0% 74.1%
5056966 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.51 44.0 3.80e-01 94.8% 81.7%
3222974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 39.0 3.63e-01 92.2% 64.8%