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OR576727.1__WNM70222.1__X__00129

Bact-Vir

OR576727.1__WNM70222.1__X__00129

Identity

Accession:
OR576727 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myxococcus_phage_Mx1

TaxID: 2994995

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-49
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o70A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 33.0 3.09e-01 100.0% 41.8%
2jx8A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 33.0 3.30e-01 84.1% 61.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927336 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.60 40.0 4.36e-01 100.0% 85.7%
3912396 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.54 32.0 3.05e-01 100.0% 40.0%
D2 medium residues 59-108
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 34.0 3.76e-01 86.0% 88.2%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945330 4294.1.1.11 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII 0.53 39.0 3.66e-01 100.0% 61.4%
D3 medium residues 109-223
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.85 47.0 4.81e-01 95.7% 57.1%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.78 55.0 5.70e-01 95.7% 76.1%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 48.0 5.15e-01 93.9% 76.5%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.72 31.0 2.59e-01 74.8% 24.3%
2xs1A01 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.72 43.0 3.01e-01 91.3% 19.3%
3aeiA00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 48.0 5.24e-01 93.9% 91.5%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.64 42.0 4.43e-01 94.8% 72.6%
1fxkC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 54.0 5.17e-01 93.9% 88.0%
6vq6H01 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 55.0 4.40e-01 94.8% 74.0%
2zdiC00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 50.0 4.57e-01 93.9% 70.3%
2q3fA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 27.0 2.31e-01 71.3% 28.5%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.56 51.0 4.50e-01 95.7% 70.2%
2ch7A00 1.10.287.950 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Methyl-accepting chemotaxis protein 0.56 51.0 3.62e-01 95.7% 35.6%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 47.0 4.59e-01 94.8% 87.3%
1ksiA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.53 38.0 2.67e-01 77.4% 89.9%
2xefA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.52 37.0 2.77e-01 75.7% 99.7%
3pivA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 41.0 3.71e-01 84.3% 100.0%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 38.0 2.63e-01 76.5% 91.2%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.51 35.0 3.46e-01 86.1% 65.6%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3995629 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.77 45.0 3.89e-01 94.8% 38.9%
5059491 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.75 43.0 3.54e-01 87.8% 33.0%
3601299 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.74 29.0 2.81e-01 86.1% 33.6%
3385833 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.70 40.0 2.77e-01 93.0% 17.5%
3229643 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.68 50.0 4.95e-01 93.9% 72.5%
4457710 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 57.0 5.59e-01 95.7% 81.7%
4956419 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 59.0 5.77e-01 93.9% 96.7%
3489283 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 59.0 5.52e-01 95.7% 90.4%
4283629 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.65 58.0 5.55e-01 93.9% 90.8%
4564040 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 58.0 5.48e-01 94.8% 88.1%
4191334 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 58.0 5.43e-01 93.9% 85.1%
4990636 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 57.0 5.49e-01 93.9% 87.7%
3212393 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 55.0 5.63e-01 89.6% 100.0%
4994900 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 57.0 5.57e-01 93.9% 93.6%
4936526 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.64 57.0 5.29e-01 93.9% 88.4%
4403516 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 56.0 5.51e-01 93.9% 95.2%
3519635 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 55.0 5.64e-01 91.3% 100.0%
4934732 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.63 56.0 5.51e-01 93.0% 95.8%
4941487 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 56.0 5.58e-01 94.8% 97.5%
3518306 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.62 47.0 3.32e-01 93.0% 27.6%
3990696 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 55.0 4.47e-01 93.9% 60.5%
3506312 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.62 55.0 5.18e-01 93.9% 89.6%
5036394 101.1.9.152 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_28 0.61 51.0 4.38e-01 93.0% 58.2%
3616294 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 49.0 4.78e-01 83.5% 88.8%
3409778 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.61 54.0 5.19e-01 95.7% 82.3%
3329453 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 53.0 4.84e-01 95.7% 73.1%
3491256 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 55.0 4.68e-01 95.7% 77.1%
5070218 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.60 53.0 5.22e-01 93.9% 92.5%
4458171 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 52.0 5.04e-01 94.8% 85.4%
4981316 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.59 55.0 4.41e-01 95.7% 75.0%
4938398 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 52.0 4.78e-01 93.9% 76.6%
4485921 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 52.0 5.20e-01 95.7% 89.2%
3592209 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 51.0 5.25e-01 93.0% 98.2%
3515407 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 54.0 4.65e-01 95.7% 82.1%
3703290 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.59 52.0 4.73e-01 95.7% 76.0%
4945806 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.58 51.0 5.06e-01 93.9% 92.5%
4942428 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 52.0 4.93e-01 93.9% 97.0%
4929746 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 51.0 4.67e-01 94.8% 75.2%
3522272 1075.1.2.20 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › DC_STAMP 0.58 37.0 3.38e-01 95.7% 50.3%
4265142 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 51.0 4.64e-01 94.8% 74.7%
5056727 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.58 53.0 4.23e-01 95.7% 74.1%
4029228 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 51.0 4.29e-01 95.7% 62.6%
4494181 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 51.0 4.68e-01 94.8% 77.9%
3398317 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 51.0 4.55e-01 95.7% 71.2%
5008906 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.58 50.0 4.66e-01 94.8% 77.9%
3709607 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 51.0 4.40e-01 95.7% 67.4%
3390284 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 50.0 4.57e-01 94.8% 73.9%
3817420 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 53.0 4.48e-01 95.7% 62.9%
4626792 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 50.0 4.65e-01 94.8% 77.9%
3800501 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 52.0 4.76e-01 95.7% 75.9%
3575976 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 50.0 4.64e-01 94.8% 80.7%
4953135 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 49.0 4.58e-01 94.8% 77.2%
3385473 3747.1.1.2 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C 0.55 49.0 4.99e-01 93.9% 100.0%
3396714 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.55 48.0 4.44e-01 93.9% 77.2%
3501944 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 47.0 3.91e-01 90.4% 97.9%
3594109 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 50.0 4.51e-01 95.7% 76.0%
3695552 5001.1.1.6 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.54 48.0 3.64e-01 98.3% 82.4%
3925754 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 45.0 4.31e-01 93.9% 91.1%
3215880 601.23.1.4 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 44.0 3.24e-01 94.8% 91.8%
3926101 601.1.2.11 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › CD20 0.52 40.0 3.62e-01 94.8% 57.1%