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OR576727.1__WNM70266.1__X__00173

Bact-Vir

OR576727.1__WNM70266.1__X__00173

Identity

Accession:
OR576727 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myxococcus_phage_Mx1

TaxID: 2994995

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-64
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.74 53.0 4.58e-01 75.0% 53.8%
3nyjA00 1.20.120.770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain 0.73 65.0 4.60e-01 100.0% 42.5%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.73 56.0 5.94e-01 95.0% 100.0%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.73 59.0 4.92e-01 95.0% 51.4%
4finB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 43.0 2.74e-01 73.3% 12.9%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.70 48.0 3.92e-01 80.0% 38.4%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 48.0 5.24e-01 88.3% 86.0%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.70 58.0 5.76e-01 100.0% 89.2%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.69 53.0 5.43e-01 93.3% 93.0%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.66 48.0 4.75e-01 83.3% 71.9%
4al0A00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.64 56.0 4.28e-01 100.0% 86.3%
2ic6A00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 51.0 4.83e-01 86.7% 81.7%
1x4tA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.64 46.0 4.75e-01 86.7% 81.0%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.63 54.0 4.24e-01 98.3% 44.4%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.63 56.0 3.98e-01 100.0% 94.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 53.0 3.51e-01 100.0% 40.7%
4b6xA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 50.0 4.79e-01 86.7% 75.4%
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.62 40.0 4.04e-01 83.3% 65.0%
1jmwA00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.61 51.0 3.88e-01 93.3% 99.3%
1vibA00 1.10.287.120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like 0.61 46.0 4.76e-01 91.7% 94.5%
2b67A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.60 50.0 3.58e-01 100.0% 64.0%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.58 47.0 4.40e-01 95.0% 72.0%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.58 39.0 4.33e-01 95.0% 93.3%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 43.0 4.13e-01 91.7% 68.9%
1vmgA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.58 42.0 3.83e-01 78.3% 58.5%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 49.0 4.05e-01 96.7% 51.3%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.58 47.0 3.91e-01 100.0% 82.3%
4jndA02 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 47.0 3.10e-01 95.0% 61.5%
2oy9A01 1.10.220.80 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › BH2638-like 0.57 36.0 3.32e-01 93.3% 50.0%
7tzoA01 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.56 46.0 3.45e-01 98.3% 58.0%
4dhxB00 1.10.246.140 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › ENY2/SUS1 0.55 48.0 4.25e-01 100.0% 86.8%
2w9mA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.52 34.0 3.33e-01 70.0% 58.8%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3298325 3846.1.1.0 ↗ alpha bundles › IcmR › IcmR › IcmR 0.80 57.0 6.29e-01 76.7% 100.0%
5052725 3826.1.1.0 ↗ alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.79 60.0 5.67e-01 80.0% 70.0%
4419194 601.4.1.38 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › RHG29_45_N 0.73 60.0 5.03e-01 93.3% 100.0%
3702706 192.15.1.0 ↗ alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.71 53.0 4.86e-01 80.0% 61.3%
185221 3502.1.1.1 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.71 52.0 5.01e-01 85.0% 68.7%
4951179 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.70 59.0 5.13e-01 100.0% 62.0%
3621595 4336.2.1.3 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › COMPASS-Shg1 0.68 57.0 5.20e-01 96.7% 70.0%
5054424 5058.1.1.2 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.68 56.0 5.27e-01 100.0% 77.5%
3210673 4085.1.1.4 ↗ alpha arrays › RbcX-like › RbcX-like › RbcX-like › MARCHF6_C 0.67 51.0 3.68e-01 85.0% 28.3%
3487984 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.66 53.0 4.48e-01 86.7% 53.0%
3402099 5043.2.1.5 ↗ extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H 0.66 54.0 5.10e-01 96.7% 80.0%
3518379 3502.1.1.1 ↗ alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.66 48.0 4.99e-01 83.3% 83.6%
3281424 3755.3.1.299 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF445 0.66 53.0 3.88e-01 91.7% 32.9%
3340355 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 48.0 4.66e-01 81.7% 77.1%
3546710 3291.1.1.200 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › TAPR1-like 0.65 54.0 4.24e-01 95.0% 54.8%
4000626 5043.1.1.11 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › ATP_synt_H 0.65 53.0 4.96e-01 96.7% 75.0%
3643902 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.65 56.0 4.41e-01 100.0% 45.4%
5018969 3646.1.1.1 ↗ alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.65 51.0 3.47e-01 88.3% 65.7%
5055477 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 52.0 4.75e-01 93.3% 80.0%
3974990 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.61 45.0 3.69e-01 78.3% 64.5%
5044927 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 49.0 4.91e-01 96.7% 98.3%
3242033 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.58 46.0 4.03e-01 93.3% 86.0%
3195418 192.8.1.376 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › RRP36 0.56 47.0 4.08e-01 95.0% 61.1%