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OR576727.1__WNM70341.1__X__00248

Bact-Vir

OR576727.1__WNM70341.1__X__00248

Identity

Accession:
OR576727 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myxococcus_phage_Mx1

TaxID: 2994995

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-87_260-289
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.70 39.0 3.36e-01 78.4% 34.4%
2zovA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.68 52.0 4.36e-01 80.4% 48.8%
3duzA03 6.10.250.3010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 37.0 4.29e-01 75.5% 76.6%
1u00A02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.63 44.0 4.56e-01 71.6% 84.4%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.62 54.0 4.15e-01 95.1% 96.1%
2ozbB01 1.10.287.4070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 48.0 4.42e-01 84.3% 84.0%
5b2nA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 48.0 3.65e-01 89.2% 86.7%
3l09A03 3.30.70.2670 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 26.0 3.46e-01 77.5% 80.9%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.59 40.0 4.12e-01 82.4% 73.7%
1f02T00 4.10.820.10 Few Secondary Structures › Irregular › Translocated Intimin Receptor; Chain T › Translocated intimin receptor, central domain 0.59 38.0 4.50e-01 84.3% 100.0%
5xukA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.59 40.0 3.88e-01 86.3% 61.7%
2lu2A00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 36.0 3.90e-01 79.4% 75.3%
7e84A03 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 46.0 4.36e-01 85.3% 69.9%
3eo8A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.59 46.0 3.59e-01 84.3% 60.3%
3mpxA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.57 45.0 3.63e-01 85.3% 67.0%
7cj3A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 46.0 3.54e-01 91.2% 83.7%
3viqA00 6.10.140.1020 Special › Helix non-globular › Helix Hairpins › 0.56 39.0 3.72e-01 93.1% 61.5%
4xxiA00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.55 46.0 4.18e-01 96.1% 70.7%
5ly3A02 3.30.420.570 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 47.0 3.72e-01 100.0% 71.0%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 39.0 3.94e-01 76.5% 100.0%
6c1qB02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 47.0 3.41e-01 100.0% 65.2%
6ks6Z01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.51 40.0 3.06e-01 86.3% 50.9%
2j0nB00 1.20.1710.10 Mainly Alpha › Up-down Bundle › IpaD-like › IpaD-like 0.51 46.0 3.76e-01 100.0% 90.9%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 3.83e-01 100.0% 79.2%
6njyA01 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 41.0 3.87e-01 89.2% 90.2%
8dkrB01 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.50 36.0 2.84e-01 75.5% 44.5%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228723 304.57.1.1 ↗ a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.68 46.0 4.48e-01 76.5% 63.6%
3715658 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.63 45.0 3.35e-01 73.5% 84.0%
3729005 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 54.0 4.05e-01 97.1% 93.7%
3926959 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.62 43.0 4.70e-01 77.5% 85.9%
4123155 3236.1.1.5 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_antiport_1 0.62 51.0 3.39e-01 90.2% 66.0%
4956381 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.59 41.0 3.53e-01 73.5% 52.4%
3719561 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.56 39.0 2.87e-01 72.5% 84.3%
3592627 601.23.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.55 49.0 3.70e-01 100.0% 83.5%
3294587 1134.1.2.2 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain › DUF641 0.54 44.0 4.06e-01 86.3% 70.8%
3601447 130.1.2.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 0.54 45.0 3.63e-01 95.1% 45.9%
4855343 5054.1.1.2 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans 0.54 47.0 3.48e-01 100.0% 55.1%
3547409 604.1.1.153 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › DUF4455 0.52 46.0 3.77e-01 100.0% 52.0%
3726808 4163.1.1.1 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.52 35.0 2.90e-01 81.4% 38.3%
3190885 601.19.1.21 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › DUF7605 0.52 39.0 3.36e-01 99.0% 47.2%
3790375 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 41.0 3.79e-01 84.3% 67.2%
3587282 142.1.1.10 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › HTH_16 0.50 32.0 3.64e-01 84.3% 92.9%
D2 high residues 91-180_196-257
PDB
Domain cluster: rep: AB605730.1__BAK52957.1__X__00145__D92-210
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.53 27.0 3.50e-01 94.1% 90.0%
3eehA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 4.12e-01 83.6% 99.1%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 4.02e-01 82.2% 92.0%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 3.71e-01 80.3% 78.3%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.50 24.0 2.53e-01 75.7% 48.5%
3h9wA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 34.0 3.87e-01 75.0% 95.4%
5dvhA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 28.0 2.65e-01 86.2% 42.7%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4459220 284.1.1.1 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_C 0.57 27.0 2.82e-01 73.0% 46.4%
4974536 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 18.0 2.70e-01 73.7% 66.2%